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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OB02G33250.1 |
Common Name | LOC102712608 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
Trihelix |
Protein Properties |
Length: 622aa MW: 67136.4 Da PI: 4.756 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OB02G33250.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 94.6 | 9.6e-30 | 94 | 178 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
rW+++e+laLi++r+em+ ++r++ lk+p Wee s++++e g++rs+k+Ckek+en+ k+yk++keg+ +r++++s +++f+qlea
OB02G33250.1 94 RWPREETLALIRIRSEMDAAFRNATLKAPVWEELSRRLAELGYQRSAKKCKEKFENVDKYYKRTKEGRAGRQDGKS--YRFFSQLEA 178
8*********************************************************************866665..*******85 PP
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2 | trihelix | 107.4 | 9.3e-34 | 393 | 478 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
rW+k+ev+aLi++r e+ee++++ k+plWee+++ m++ g++rs+k+Ckekwen+nk++kk+ke++k+r +++s+tcpyf+ql+a
OB02G33250.1 393 RWPKEEVQALIDLRMEKEEQYSDMGPKGPLWEEIAAGMQRIGYNRSAKRCKEKWENINKYFKKVKESNKRR-PDDSKTCPYFHQLDA 478
8********************************************************************97.99***********85 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0010192 | Biological Process | mucilage biosynthetic process |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 622 aa
Download sequence Send
to blast |
MQHPQGAGEP LYPYADHAPT TMGVFSVPPP PTTPAPPASG DVIPLPTQPQ PQPAGPEEFH 60 ATPGSGSAVA VNPNDDDMMM ADVAGGAGGS SGNRWPREET LALIRIRSEM DAAFRNATLK 120 APVWEELSRR LAELGYQRSA KKCKEKFENV DKYYKRTKEG RAGRQDGKSY RFFSQLEALH 180 AAAPPPSQQQ QQGMPVEDPQ PLAMAKMLPA AADLGFLSMS SDSESDDESD EEEEEDAAAA 240 AGGGDDEGGG ISRKMMAMFE GMMRQVTEKQ DAMQRAFMET LEKWESVRTE SEEAWRRKEV 300 ARMNREREIL SQERAAAASR DAALIAFLQR LVAGEHVKVS PSGTAATRAP FQAPPPSHHD 360 AAAAGLQLVP RAKAEEGWAG GDGTGSGTTA PSRWPKEEVQ ALIDLRMEKE EQYSDMGPKG 420 PLWEEIAAGM QRIGYNRSAK RCKEKWENIN KYFKKVKESN KRRPDDSKTC PYFHQLDAIY 480 SKKRFAGKRS GAGGVTIASA SSLAIVTVSG QESQRELEGK SSNDGNVQLA VPLLLQNAAD 540 KKAEGTEAEP NITAAEETDS DEMGGNYTDD GDDDDKMQYK IEFQKPNASS GSGSGDDAPA 600 PTTTAAATSS ALASNTSFLA VQ
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK111742 | 0.0 | AK111742.1 Oryza sativa Japonica Group cDNA clone:J023050K14, full insert sequence. |