PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G33250.1
Common NameLOC102712608
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 622aa    MW: 67136.4 Da    PI: 4.756
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G33250.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.69.6e-3094178187
      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                   rW+++e+laLi++r+em+ ++r++ lk+p Wee s++++e g++rs+k+Ckek+en+ k+yk++keg+ +r++++s  +++f+qlea
  OB02G33250.1  94 RWPREETLALIRIRSEMDAAFRNATLKAPVWEELSRRLAELGYQRSAKKCKEKFENVDKYYKRTKEGRAGRQDGKS--YRFFSQLEA 178
                   8*********************************************************************866665..*******85 PP
2trihelix107.49.3e-34393478187
      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                   rW+k+ev+aLi++r e+ee++++   k+plWee+++ m++ g++rs+k+Ckekwen+nk++kk+ke++k+r +++s+tcpyf+ql+a
  OB02G33250.1 393 RWPKEEVQALIDLRMEKEEQYSDMGPKGPLWEEIAAGMQRIGYNRSAKRCKEKWENINKYFKKVKESNKRR-PDDSKTCPYFHQLDA 478
                   8********************************************************************97.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.1491153IPR001005SANT/Myb domain
CDDcd122037.15E-2793158No hitNo description
PROSITE profilePS500906.9893151IPR017877Myb-like domain
PfamPF138373.1E-2193179No hitNo description
SMARTSM007178.9E-6390452IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-5392449IPR009057Homeodomain-like
CDDcd122034.57E-26392457No hitNo description
PROSITE profilePS500907.851392450IPR017877Myb-like domain
PfamPF138372.6E-22393479No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010192Biological Processmucilage biosynthetic process
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
MQHPQGAGEP LYPYADHAPT TMGVFSVPPP PTTPAPPASG DVIPLPTQPQ PQPAGPEEFH  60
ATPGSGSAVA VNPNDDDMMM ADVAGGAGGS SGNRWPREET LALIRIRSEM DAAFRNATLK  120
APVWEELSRR LAELGYQRSA KKCKEKFENV DKYYKRTKEG RAGRQDGKSY RFFSQLEALH  180
AAAPPPSQQQ QQGMPVEDPQ PLAMAKMLPA AADLGFLSMS SDSESDDESD EEEEEDAAAA  240
AGGGDDEGGG ISRKMMAMFE GMMRQVTEKQ DAMQRAFMET LEKWESVRTE SEEAWRRKEV  300
ARMNREREIL SQERAAAASR DAALIAFLQR LVAGEHVKVS PSGTAATRAP FQAPPPSHHD  360
AAAAGLQLVP RAKAEEGWAG GDGTGSGTTA PSRWPKEEVQ ALIDLRMEKE EQYSDMGPKG  420
PLWEEIAAGM QRIGYNRSAK RCKEKWENIN KYFKKVKESN KRRPDDSKTC PYFHQLDAIY  480
SKKRFAGKRS GAGGVTIASA SSLAIVTVSG QESQRELEGK SSNDGNVQLA VPLLLQNAAD  540
KKAEGTEAEP NITAAEETDS DEMGGNYTDD GDDDDKMQYK IEFQKPNASS GSGSGDDAPA  600
PTTTAAATSS ALASNTSFLA VQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00243DAPTransfer from AT1G76880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G33250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1117420.0AK111742.1 Oryza sativa Japonica Group cDNA clone:J023050K14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006647608.20.0PREDICTED: trihelix transcription factor GTL1-like isoform X1
TrEMBLJ3LFA80.0J3LFA8_ORYBR; Uncharacterized protein
STRINGOB02G33250.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.22e-55Trihelix family protein