PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G30670.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 303aa    MW: 31451.7 Da    PI: 8.3842
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G30670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-12239284655
                   HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +++Er RR ri +++ +L+el+P+     +k  s a++L +Ave+Ik Lq
  OB02G30670.1 239 SIAERERRTRISEKLRKLQELVPNM----DKQTSTADMLDLAVEHIKGLQ 284
                   689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.723233283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-16236298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.39E-13237288No hitNo description
Gene3DG3DSA:4.10.280.106.4E-15238296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-10239284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13239289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MMRRFLPAGG GGGGGGVEPS SSXXXXXXXX XXXXXXXXXG GDISLGPHGG GGGGGGHHLQ  60
DGSVDLLARH SSSPAGFFSN LMASNGFPGS KGGGGSGAEA HHHPFHGSMA TPGSGSSSGG  120
GRKMKSQLSF TAGPGHLSHI AEDGGFPVDR AGHSAGAEAS VPRTFSAGGS SSGGFSIVGP  180
WEESRDIIST LGGYESQFGG MASTSALEMA GMDRYLQLQH DQVPFKVRAK RGCATHPRSI  240
AERERRTRIS EKLRKLQELV PNMDKQTSTA DMLDLAVEHI KGLQSQLQAL KHEQEKCTCC  300
SRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G30670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1108330.0AK110833.1 Oryza sativa Japonica Group cDNA clone:002-172-A09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006648820.21e-156PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH128
SwissprotQ8H1027e-56BH128_ARATH; Transcription factor bHLH128
TrEMBLJ3LEK00.0J3LEK0_ORYBR; Uncharacterized protein
STRINGOB02G30670.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115313141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.17e-48bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]