PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB02G28310.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 84aa MW: 9089.36 Da PI: 11.9062 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.9 | 1.4e-19 | 20 | 70 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr++k +g+Wv+eIr p g + r++lg+f++ae+Aa a++ a+++l+g OB02G28310.1 20 PQYRGVRRRK-WGKWVSEIRQP---GTKVRIWLGSFDSAEMAAVAHDVAALRLRG 70 68*****998.**********8...325*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.5E-13 | 20 | 70 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.55E-23 | 21 | 79 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.696 | 21 | 78 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-37 | 21 | 84 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.4E-32 | 21 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-13 | 22 | 33 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.79E-29 | 22 | 78 | No hit | No description |
PRINTS | PR00367 | 6.0E-13 | 60 | 80 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 84 aa Download sequence Send to blast |
MEQQQAAAAP GMAGGGGGGP QYRGVRRRKW GKWVSEIRQP GTKVRIWLGS FDSAEMAAVA 60 HDVAALRLRG RDARLNFPGS VDRL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-18 | 19 | 82 | 3 | 67 | ATERF1 |
3gcc_A | 4e-18 | 19 | 82 | 3 | 67 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00227 | DAP | Transfer from AT1G71450 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB02G28310.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020194473.1 | 2e-35 | ethylene-responsive transcription factor ERF021-like | ||||
Swissprot | Q9C9I2 | 1e-28 | ERF21_ARATH; Ethylene-responsive transcription factor ERF021 | ||||
TrEMBL | J3LDW4 | 1e-52 | J3LDW4_ORYBR; Uncharacterized protein | ||||
STRING | OB02G28310.1 | 2e-53 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2244 | 33 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71450.1 | 3e-15 | ERF family protein |