PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G28310.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 84aa    MW: 9089.36 Da    PI: 11.9062
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G28310.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.91.4e-192070155
           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  ++y+GVr++k +g+Wv+eIr p   g + r++lg+f++ae+Aa a++ a+++l+g
  OB02G28310.1 20 PQYRGVRRRK-WGKWVSEIRQP---GTKVRIWLGSFDSAEMAAVAHDVAALRLRG 70
                  68*****998.**********8...325*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.5E-132070IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-232179IPR016177DNA-binding domain
PROSITE profilePS5103223.6962178IPR001471AP2/ERF domain
SMARTSM003801.4E-372184IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-322178IPR001471AP2/ERF domain
PRINTSPR003676.0E-132233IPR001471AP2/ERF domain
CDDcd000186.79E-292278No hitNo description
PRINTSPR003676.0E-136080IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
MEQQQAAAAP GMAGGGGGGP QYRGVRRRKW GKWVSEIRQP GTKVRIWLGS FDSAEMAAVA  60
HDVAALRLRG RDARLNFPGS VDRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-181982367ATERF1
3gcc_A4e-181982367ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G28310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194473.12e-35ethylene-responsive transcription factor ERF021-like
SwissprotQ9C9I21e-28ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLJ3LDW41e-52J3LDW4_ORYBR; Uncharacterized protein
STRINGOB02G28310.12e-53(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22443389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.13e-15ERF family protein