PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G25460.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 458aa    MW: 51967.4 Da    PI: 6.1858
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G25460.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.0005689112223
                   EETTTTEEESSHHHHHHHHHH..T CS
       zf-C2H2   2 kCpdCgksFsrksnLkrHirt..H 23 
                   +C dCgk+++++ +   H ++  H
  OB02G25460.1  89 VCADCGKPCRSQTEVDLHTKRtgH 112
                   7***************99998666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS00028090112IPR007087Zinc finger, C2H2
SuperFamilySSF469341.15E-17146210IPR009060UBA-like
Gene3DG3DSA:1.10.8.101.5E-8146191No hitNo description
PROSITE profilePS5003010.956156197IPR015940Ubiquitin-associated domain
CDDcd142902.45E-19156204No hitNo description
PfamPF006271.4E-6158194IPR015940Ubiquitin-associated domain
SMARTSM001658.9E-4158196IPR015940Ubiquitin-associated domain
Gene3DG3DSA:1.10.8.105.2E-4192213No hitNo description
SuperFamilySSF1435031.29E-27348454IPR018997PUB domain
CDDcd104611.06E-63352458No hitNo description
PfamPF094093.1E-23365436IPR018997PUB domain
SMARTSM005805.1E-25368431IPR018997PUB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MARRLWQGWR SDGRRRATAV ERGRSRPSDE GRCRSASKQF YWEEEEDGEA TVAAVMARPT  60
ASVEEAQAHA EATSHANFSE STEAVLNLVC ADCGKPCRSQ TEVDLHTKRT GHTEFTDKTM  120
EAAKPIDLEA PQKHAAEAMD VDASSSAEPQ EMVAPEVNKE MLADLEAMGF TTARATRALH  180
FSGNSTIEGA INWLSEHQDD PDIDEPLMVP ANTNTEANKP SLSPEEMKIK AQELRERARK  240
KKEEEERRME REREKERIRI GKELLEAKRI EEDNERKRMI ELRRLEKEEE KRAREKIRQK  300
LEEDKAERRR KLGLPPEDPA AAKPSAPPPV EEKKSALPVR PATKAERMRD CLRNLKQQNK  360
DDDAKVKRAF QTLLTYIGNV AKNPDEEKFR KIRLTNATFQ ERVGNLHGGI EFLQVCGFEK  420
LEGNEFLFLA RDKVDKAVLN TAGAELNSAI TNPFFGVL
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G25460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1029560.0AK102956.1 Oryza sativa Japonica Group cDNA clone:J033115G09, full insert sequence.
GenBankCU4062150.0CU406215.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C109B09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006648654.20.0PREDICTED: UBX domain-containing protein 1
TrEMBLJ3LD290.0J3LD29_ORYBR; Uncharacterized protein
STRINGOB02G25460.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84641517