PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB02G23710.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 78aa MW: 8645.91 Da PI: 10.242 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 30.9 | 6.8e-10 | 6 | 55 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr ++g+Wv+ I p g+++r+ lg+f e+A a++ a+++l+g+ OB02G23710.1 6 CQYRGVR---NWGKWVSDISQP---GRKTRICLGSFELVEMAVVAHDVAALRLRGH 55 78****8...7*****998776...556**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.86E-21 | 6 | 62 | No hit | No description |
PRINTS | PR00367 | 2.5E-6 | 6 | 17 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.4E-4 | 7 | 55 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.4E-22 | 7 | 62 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.07E-16 | 7 | 63 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 8.2E-18 | 7 | 68 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.501 | 7 | 62 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-6 | 44 | 64 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 78 aa Download sequence Send to blast |
MAAAGCQYRG VRNWGKWVSD ISQPGRKTRI CLGSFELVEM AVVAHDVAAL RLRGHDARLN 60 FPGSVNVISR NLHQISEQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB02G23710.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006653443.1 | 3e-30 | PREDICTED: dehydration-responsive element-binding protein 1B | ||||
Swissprot | Q9C9I2 | 2e-20 | ERF21_ARATH; Ethylene-responsive transcription factor ERF021 | ||||
TrEMBL | J3LCK4 | 4e-51 | J3LCK4_ORYBR; Uncharacterized protein | ||||
STRING | OB02G23710.1 | 7e-52 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2244 | 33 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71450.1 | 1e-22 | ERF family protein |