PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G23710.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 78aa    MW: 8645.91 Da    PI: 10.242
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G23710.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.96.8e-10655156
           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                  ++y+GVr   ++g+Wv+ I  p   g+++r+ lg+f   e+A  a++ a+++l+g+
  OB02G23710.1  6 CQYRGVR---NWGKWVSDISQP---GRKTRICLGSFELVEMAVVAHDVAALRLRGH 55
                  78****8...7*****998776...556**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.86E-21662No hitNo description
PRINTSPR003672.5E-6617IPR001471AP2/ERF domain
PfamPF008472.4E-4755IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-22762IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-16763IPR016177DNA-binding domain
SMARTSM003808.2E-18768IPR001471AP2/ERF domain
PROSITE profilePS5103215.501762IPR001471AP2/ERF domain
PRINTSPR003672.5E-64464IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
MAAAGCQYRG VRNWGKWVSD ISQPGRKTRI CLGSFELVEM AVVAHDVAAL RLRGHDARLN  60
FPGSVNVISR NLHQISEQ
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G23710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006653443.13e-30PREDICTED: dehydration-responsive element-binding protein 1B
SwissprotQ9C9I22e-20ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLJ3LCK44e-51J3LCK4_ORYBR; Uncharacterized protein
STRINGOB02G23710.17e-52(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22443389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.11e-22ERF family protein