PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G22950.1
Common NameLOC102710275
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 401aa    MW: 43480.1 Da    PI: 6.6544
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G22950.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.13.5e-32234289156
       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                   kpr++W+peLH+rF++a++qLGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  OB02G22950.1 234 KPRRCWAPELHRRFLQALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 289
                   79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.508231291IPR017930Myb domain
SuperFamilySSF466892.4E-17232292IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-28232292IPR009057Homeodomain-like
TIGRFAMsTIGR015573.3E-27234289IPR006447Myb domain, plants
PfamPF002491.8E-6236287IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MEVVDHAERD LARRRCREYL LALEEERRKI QVFQRELPLC FDLVTQTIEG MRSQMDGVGS  60
EETVSDHGPP PVLEEFIPLK PSLSLSSSEE ESNHAASDKA GKEEGAQTSE RHSSPQTLPE  120
AKRVTPDWLQ SVQLWSQQPQ QPSSPSQTPA KDLPCKPVAL NARKTGGAFQ PFEKEKRAEL  180
PASSTTAAAS STVVGDSGDK PADDTDKPRE TDNDGMDGKD KDKEKESQSQ PHRKPRRCWA  240
PELHRRFLQA LQQLGGSHVA TPKQIRELMK VDGLTNDEVK SHLQKYRLHT RRPSSTGQSS  300
AAAGVAAPPA PQFVVVGSIW VPPPEYAAAA AAQQQQVQLA AADASVSANP VYAPVAMLAP  360
GLQPHSHREQ RQQQGQRHSG SEGSGDTGGG RSSSPAVSSS S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-12234287255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-12234287255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A8e-13234287154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-13234287154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-13234287154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-13234287154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-12234287255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-12234287255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-12234287255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-12234287255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-12234287255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-12234287255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that may play a role in response to nitrogen. May be involved in a time-dependent signaling for transcriptional regulation of nitrate-responsive genes. Binds specifically to the DNA sequence motif 5'-GAATC-3' or 5'-GAATATTC-3'. Represses the activity of its own promoter trough binding to these motifs.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00160DAPTransfer from AT1G25550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G22950.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by nitrate. {ECO:0000269|PubMed:23324170}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0643550.0AK064355.1 Oryza sativa Japonica Group cDNA clone:002-108-B01, full insert sequence.
GenBankAK1018090.0AK101809.1 Oryza sativa Japonica Group cDNA clone:J033066M05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015689147.10.0PREDICTED: probable transcription factor KAN2
SwissprotQ6Z8691e-179NIGT1_ORYSJ; Transcription factor NIGT1
TrEMBLJ3LCC80.0J3LCC8_ORYBR; Uncharacterized protein
STRINGOB02G22950.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64703754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25550.14e-49G2-like family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sawaki N, et al.
    A nitrate-inducible GARP family gene encodes an auto-repressible transcriptional repressor in rice.
    Plant Cell Physiol., 2013. 54(4): p. 506-17
    [PMID:23324170]