PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G21090.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 524aa    MW: 56701.6 Da    PI: 5.2766
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G21090.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM49.91e-1581441128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgk.rknr.atksgyWkatgk..dkev 92 
                   l pGf+++P  e+++ ++L + +++++l++++++   d +++ Pw+L  ++ +++ +e yf  ++  + + g+ + +r ++  g W ++ +  + ev
  OB02G21090.1   8 LSPGFKYDPDVEQILRFFLLPYLRHRRLPVDDAVLLDDPTRAPPWTLLdSHGRGRVDEAYFIGPAPGAGRGGRqKVSRsVAGGGKWIKQSTedSGEV 104
                   579***************************9999999**********7345555666999999998887754415567678899**87665226678 PP

           NAM  93 lskkgelvglkktLvfy....kgrapkgektdWvmheyrl 128
                    + +++ ++ k  L f+     g+++++++t Wvmhey +
  OB02G21090.1 105 RCYGETFKWEKCRLSFHfnvaAGDRRRSHSTGWVMHEYVV 144
                   887888899999****988888999999**********75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.1E-237164IPR003441NAC domain
PROSITE profilePS5100521.8118164IPR003441NAC domain
PfamPF023651.2E-910143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MVTAAGLLSP GFKYDPDVEQ ILRFFLLPYL RHRRLPVDDA VLLDDPTRAP PWTLLDSHGR  60
GRVDEAYFIG PAPGAGRGGR QKVSRSVAGG GKWIKQSTED SGEVRCYGET FKWEKCRLSF  120
HFNVAAGDRR RSHSTGWVMH EYVVVPPPGS AIVANHSACR ISFTGHGKNR KRVPDDYVAD  180
AVEDVRATST AAAAGAPPLS HEPSSHGYCA DTQQDDQQSL PATEQSNQDH DYAYTDHNHQ  240
QSNQHHFPAA EQVYQDYLLS EIQSNQEHGC EQDDDGDDEQ YHVLYGDLTS CQEPVVTSQP  300
FLYQEQVTFT GLDGGHVNSD DGEHAGPRAV EPLLDAHLTR RQQDEIVNVD HDNHEAHESA  360
AATASHSAGA PPPLQQPSAP PTLNHLQEFV DQLRAAKLAG GGGLNGAPLA EEPAAARGYH  420
GPMPTMDSAC LEKIEAYLTA AAKKLCGTGH TSGEHCDALP PVQPGTAELA RVVGLFVREV  480
VDVVKVAAAG DHGASSDQPL SDFDKAQNVL LTKLMVIINR IAMG
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G21090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLJ3LBU20.0J3LBU2_ORYBR; Uncharacterized protein
STRINGOB02G21090.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143261123