PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G18670.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 382aa    MW: 44353.4 Da    PI: 12.506
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G18670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind77.52.3e-241270260
                  HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
  HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60
                  F+ k+y++++d++++ ++sw   +nsfvv+++ efa+++LpkyFkhsnf+SFvRQLn+Y
  OB02G18670.1 12 FVAKTYRMVDDPATDAVVSWGPGNNSFVVWNTPEFARDLLPKYFKHSNFSSFVRQLNTY 70
                  9*********************99**********************************9 PP
2HSF_DNA-bind67.43e-219615434101
                   HHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXX CS
  HSF_DNA-bind  34 eefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkk 101
                   + f++++Lp +Fkhsnf+SFvRQLn+YgF+kv+ ++         weF+h sF +g+++ll++i r++
  OB02G18670.1  96 HAFSQTLLPAHFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFAHVSFLRGQTHLLRRIGRRS 154
                   68*******************************999.........********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.0E-27471IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.18E-23880IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.8E-24875IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.6E-201270IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-141235IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-145062IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-146375IPR000232Heat shock factor (HSF)-type, DNA-binding
SMARTSM004158.8E-2377153IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.1E-1895153IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.76E-1796153IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.3E-2196153IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE patternPS004340103127IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MATAAEGGVA PFVAKTYRMV DDPATDAVVS WGPGNNSFVV WNTPEFARDL LPKYFKHSNF  60
SSFVRQLNTY VRRPSLSLSP SDSSPSPSLP ALSIYHAFSQ TLLPAHFKHS NFSSFVRQLN  120
TYGFRKVDPD RWEFAHVSFL RGQTHLLRRI GRRSGGGXXX XXXXXXXXXX XXXXXXXXXX  180
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  240
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXRRR VLRRRRLRPG  300
ARRVRAGRHG RLHGPLHRRR RVRRRLRGQR VPDAVRVPGG GQRLLTAAAA MRFVLRVTPD  360
RFVYLTPAFF PPFSQSVWEK WL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-19215319129Heat shock factor protein 1
5d5v_B2e-19215319129Heat shock factor protein 1
5d5v_D2e-19215319129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1292302RRRRLRPGARR
2320326RVRRRLR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB02G18670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1064883e-80AK106488.1 Oryza sativa Japonica Group cDNA clone:002-105-A02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLJ3LB502e-78J3LB50_ORYBR; Uncharacterized protein
STRINGOB02G18670.13e-79(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17750.12e-36heat shock factor 1