PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB02G14840.1

Common Name

LOC102706628

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

SBP

Protein Properties

Length: 324aa MW: 35088.5 Da PI: 9.551

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB02G14840.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	123.6	8.4e-39	65	142	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC +l +k+yhr+h+vC +hsk p v+v+g+e+rfCqqCsrfh+lsefD++krsCrrrL +hn+rrrk+q+ OB02G14840.1 65 RCQVEGCGLELVGVKDYHRKHRVCVAHSKFPRVIVAGQERRFCQQCSRFHALSEFDQKKRSCRRRLYDHNARRRKPQT 142 6**************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.0E-32	58	127	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.009	63	140	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.07E-37	64	145	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.2E-29	66	139	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MDWMAPPKPT SPPLLWDWAD AAVPGSSGEA AAAAAAPGRR RKEKRARAEE VGGGGGGGGG 60 GEKVRCQVEG CGLELVGVKD YHRKHRVCVA HSKFPRVIVA GQERRFCQQC SRFHALSEFD 120 QKKRSCRRRL YDHNARRRKP QTDAFSFAAA RVPLSLLFDD SREISFVWNK DLLSQVKPFA 180 VSPWESSSEV GTTDGHIYLD KSHLSKSLPT FNTNIYELLR MKGPDASITA SKFDGAPDLQ 240 HALSLLSASS SGLPDPVQQA SRLIQFTGGS QNSRGLPPLH GGNSGSASCA DVQPTAQPAH 300 LVRFTMGASS NACESNFFSL NQIN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-23	55	139	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	38	43	RRRKEK
2	121	138	KKRSCRRRLYDHNARRRK

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB02G14840.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK061484	1e-180	AK061484.1 Oryza sativa Japonica Group cDNA clone:006-308-H09, full insert sequence.
GenBank	AK068702	1e-180	AK068702.1 Oryza sativa Japonica Group cDNA clone:J013159I15, full insert sequence.
GenBank	CT828741	1e-180	CT828741.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA126O04, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006646951.1	0.0	PREDICTED: squamosa promoter-binding-like protein 4 isoform X1
Swissprot	Q6H509	1e-115	SPL4_ORYSJ; Squamosa promoter-binding-like protein 4
TrEMBL	J3LA17	0.0	J3LA17_ORYBR; Uncharacterized protein
STRING	OB02G14840.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6271	29	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.3	8e-41	squamosa promoter binding protein-like 2

Link Out ? help Back to Top
Entrez Gene	102706628

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]