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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OB02G10400.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
Trihelix |
Protein Properties |
Length: 333aa MW: 35580.9 Da PI: 4.5766 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OB02G10400.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 102.9 | 2.5e-32 | 151 | 235 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
rW+k+ev aLi++r+ +e+r+++ lk+plWeevs++m + g++rs+k+Ckekwen+nk+++k ke+ kkr + + +tcpyfd+l+
OB02G10400.1 151 RWPKHEVEALIRVRTGLEDRFQEPGLKGPLWEEVSARMTAAGYRRSSKRCKEKWENINKYFRKAKESGKKR-PAHAKTCPYFDELD 235
8********************************************************************98.99999*******98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 333 aa
Download sequence Send
to blast |
MQSGYGGVSE FQQYMLDPGA FAISAPPQPA QPPAPGGQDL AAPFRRPLDI DYIHGASSSK 60 RAASKDKAAT PESPAPPPPA NYFKTKGDDN AAAASASAGA KISGETITLP PPAANPVPPV 120 DDMSQDGAGK ELVAYDVEAA ERGALHLSSS RWPKHEVEAL IRVRTGLEDR FQEPGLKGPL 180 WEEVSARMTA AGYRRSSKRC KEKWENINKY FRKAKESGKK RPAHAKTCPY FDELDRLYSR 240 SGGGGGNNAG AGEDAKASSE LLDAVVKYPD VRCAPPGFPF DGEQNEACEG GGKEAGKEEE 300 ARDDGDGEER AGGRATTDQD EEEEEDDQVE DDR
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK120063 | 1e-146 | AK120063.1 Oryza sativa Japonica Group cDNA clone:J013001K22, full insert sequence. |
GenBank | AP004049 | 1e-146 | AP004049.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1212_C06. |
GenBank | AP006720 | 1e-146 | AP006720.1 Oryza sativa Japonica Group genomic DNA, chromosome 2, clone:OJA1212_C06. |
GenBank | AP014958 | 1e-146 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
GenBank | CP012610 | 1e-146 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |