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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB01G54660.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRAS | ||||||||
Protein Properties | Length: 81aa MW: 9412.63 Da PI: 5.7488 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 86 | 6.4e-27 | 1 | 78 | 239 | 316 |
GRAS 239 vvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWr 316 +vv+eqea+hn++ + erfleal+yysal+++le++++r s er+ vEr llg+ei+n+ ac gaer erhe+le+W OB01G54660.1 1 MVVTEQEANHNAAGLTERFLEALNYYSALLNCLEVGAARGSVERARVERWLLGEEIKNIMACDGAERWERHERLERWA 78 79***************************************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 2.2E-24 | 1 | 78 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 17.732 | 1 | 81 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 81 aa Download sequence Send to blast |
MVVTEQEANH NAAGLTERFL EALNYYSALL NCLEVGAARG SVERARVERW LLGEEIKNIM 60 ACDGAERWER HERLERWARP R |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB01G54660.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK287540 | 1e-82 | AK287540.1 Oryza sativa Japonica Group cDNA, clone: J065011K01, full insert sequence. | |||
GenBank | AP003259 | 1e-82 | AP003259.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0466H10. | |||
GenBank | AP014957 | 1e-82 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020165765.1 | 3e-39 | scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 4e-25 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | J3L8B0 | 2e-50 | J3L8B0_ORYBR; Uncharacterized protein | ||||
STRING | OB01G54660.1 | 3e-51 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP604 | 38 | 176 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 3e-20 | scarecrow-like 3 |
Publications ? help Back to Top | |||
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