PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G51140.1
Common NameLOC102708483
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CAMTA
Protein Properties Length: 850aa    MW: 96274.5 Da    PI: 7.026
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G51140.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1171.31.4e-53151322118
          CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrr 97 
                   ++e k+rwlk++e+++iL+n++++ +t++++++p+sg+++L+nr+++ryfr+DGy+w+kkk+gkt+ E+he+LKv++ve+l+cyYah+++n+t qrr
  OB01G51140.1  15 HQEvKSRWLKPKEVLQILQNHDRFIITNKTPHKPPSGAWFLFNRRVLRYFRNDGYEWRKKKNGKTIAEAHERLKVDNVEALNCYYAHADKNSTVQRR 111
                   56779******************************************************************************************** PP

          CG-1  98 cywlLeeelekivlvhylevk 118
                   +yw+L+ ++++iv+vhy++v+
  OB01G51140.1 112 IYWMLDPAYDHIVFVHYRDVQ 132
                   ******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143776.44311137IPR005559CG-1 DNA-binding domain
SMARTSM010761.7E-6814132IPR005559CG-1 DNA-binding domain
PfamPF038599.2E-4818131IPR005559CG-1 DNA-binding domain
SuperFamilySSF812962.0E-14316399IPR014756Immunoglobulin E-set
Gene3DG3DSA:2.60.40.102.1E-5316401IPR013783Immunoglobulin-like fold
PfamPF018331.7E-5317398IPR002909IPT domain
CDDcd002041.05E-10491571No hitNo description
PfamPF136372.8E-9523575No hitNo description
SuperFamilySSF484031.34E-14524616IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.335526586IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.8E-16526619IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.621554586IPR002110Ankyrin repeat
SMARTSM002482.1E-4554583IPR002110Ankyrin repeat
SMARTSM0001540670692IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500966.504671700IPR000048IQ motif, EF-hand binding site
SMARTSM000150.012715737IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.181716745IPR000048IQ motif, EF-hand binding site
PfamPF006120.013717736IPR000048IQ motif, EF-hand binding site
SMARTSM000150.83738760IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.931739767IPR000048IQ motif, EF-hand binding site
PfamPF006120.05740760IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 850 aa     Download sequence    Send to blast
MMQQQQQGFD THRIHQEVKS RWLKPKEVLQ ILQNHDRFII TNKTPHKPPS GAWFLFNRRV  60
LRYFRNDGYE WRKKKNGKTI AEAHERLKVD NVEALNCYYA HADKNSTVQR RIYWMLDPAY  120
DHIVFVHYRD VQEGSISVSA LNNSSTSNQN GSASRGEAQS SPGLTSEIFA PCLNSCSPGS  180
AEEVSSQIVA INNETNNGSQ PDWVQNCNQA ALRKLKIQLS LEDKEDHDVD AEDIPSNSES  240
ITVVGVQNEE PGTCRNLVDI FNELEFNEDN RPKETGLPFS STIDVLKNSE SWLEEDQLEA  300
ILQSASMTMG ENQWFNIREI SPEWSYCSES TKVIIAGDFL CDPSHGSWAI QFGDAKVPVE  360
IVQQGVIRCH TPCLEAGKVT MYLIDGNEKA CSEAREFEFH NKPTKSMVCE NRKLCSEAEA  420
FEFHQRPTES NNERLLLFNY VQLLFDGHVS EQFLKFGLPL PNVECRLQVS PSEIMKGTTE  480
QLNHDTTVNC IMEVLLNNKL EEWLSSKYER NSEGNHFLPR QYHGIIHTIA ALGYNWALKL  540
LLNSGVLVNY RDANGWTALH WAARFGREET VVLLLAAGAS AGALSDPTAE DPAAKTPSSV  600
AFAHGFKGLS AFLSEAELTT HLHSLESKEN GASGGGISRV VDRLSDTFDH VQGGSDNQLA  660
LKDSLGAVRN AVQAAGRIQT AFRMFSFRKK QQAAHQNRDS HILSIRKVGA ASRGMLEKAA  720
LSIQKNFRCW KKRKEFLKIR KNVIKIQARV RAHQQHNKYK DFLRSVGILE KVMLRWYRKG  780
VGLRGFHSEA MPIDEEEEVD IVNVFRKQRV ETAISEAVSR VSSIIDSPVA KQQYRRMLEM  840
YQQKKDDNEK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G51140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0689320.0AK068932.1 Oryza sativa Japonica Group cDNA clone:J023002D02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006645250.20.0PREDICTED: calmodulin-binding transcription activator 4-like isoform X1
TrEMBLJ3L7A80.0J3L7A8_ORYBR; Uncharacterized protein
STRINGOB01G51140.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94073440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-113Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains