PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G50150.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 427aa    MW: 46273.3 Da    PI: 4.355
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G50150.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.31.9e-131652844
                  HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
        SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                  +r  t+++R++g+lKKA EL  LC++ vav+ ++++g
  OB01G50150.1 16 KRASTYARRKEGLLKKARELAELCNIPVAVVCAGPDG 52
                  6889*******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.021152IPR002100Transcription factor, MADS-box
SMARTSM004327.8E-14160IPR002100Transcription factor, MADS-box
CDDcd002661.44E-19282No hitNo description
SuperFamilySSF554551.15E-17384IPR002100Transcription factor, MADS-box
PfamPF003193.1E-121452IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MARRKVPMKL LGEPKKRAST YARRKEGLLK KARELAELCN IPVAVVCAGP DGGAPTVWAT  60
GDDFDGIVGR YLALPAEKRA RHTHVDYLRD QLDKEKAKLA ALERDVPDEL TTPGALLDGM  120
SYDELQRLLA SIDASLKATA ERREALELLA DDGDVGDGGR RDADAPLVPS IGSSSVDVHG  180
YQHQAHALGN GGLLEPVPLN SFHPYNAGAT MTQPMYNDAP YMAGHGVDMI SGYQMQMQMP  240
SNGSNNHDQL AWGPFQPCNA TIVHPEYDHL QCWDNNNAGG YQMQPATAAT AGWHTPVTIT  300
QNIHGEPCNA ILPSAGDPYM DTGGNGNGIG IGIDTTVADY HIPNTGDNFM DEPVQLLAID  360
SDKRYTYTTA PGGDEAQFSM DDLLQCSDAT QNSSSLNQLH YLADLADGFD FDFPSNLDDP  420
LDLYWEE
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G50150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640115.21e-143uncharacterized protein LOC4324340
TrEMBLJ3L7090.0J3L709_ORYBR; Uncharacterized protein
STRINGOB01G50150.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45722960
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31640.14e-14AGAMOUS-like 92