PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB01G49820.1 | ||||||||
Common Name | LOC102716361 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 1279aa MW: 141124 Da PI: 8.6042 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.4 | 0.00098 | 1184 | 1206 | 3 | 23 |
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 Cp Cgk F ++ +L +H ++H OB01G49820.1 1184 CPvkGCGKKFFSHKYLLQHRKVH 1206 9999*****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00545 | 1.1E-16 | 23 | 64 | IPR003349 | JmjN domain |
PROSITE profile | PS51183 | 14.728 | 24 | 65 | IPR003349 | JmjN domain |
Pfam | PF02375 | 6.8E-15 | 25 | 58 | IPR003349 | JmjN domain |
SMART | SM00558 | 1.7E-49 | 192 | 361 | IPR003347 | JmjC domain |
PROSITE profile | PS51184 | 36.321 | 195 | 361 | IPR003347 | JmjC domain |
SuperFamily | SSF51197 | 4.67E-25 | 207 | 357 | No hit | No description |
Pfam | PF02373 | 3.0E-37 | 225 | 344 | IPR003347 | JmjC domain |
SMART | SM00355 | 19 | 1159 | 1181 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.612 | 1182 | 1211 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.62 | 1182 | 1206 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 9.7E-6 | 1184 | 1210 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 1184 | 1206 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.13E-9 | 1198 | 1238 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.5E-8 | 1211 | 1236 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.323 | 1212 | 1241 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0029 | 1212 | 1236 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 1214 | 1236 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.05E-7 | 1230 | 1264 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.4E-9 | 1237 | 1265 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.18 | 1242 | 1273 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.7 | 1242 | 1268 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 1244 | 1268 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009741 | Biological Process | response to brassinosteroid | ||||
GO:0009826 | Biological Process | unidimensional cell growth | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0033169 | Biological Process | histone H3-K9 demethylation | ||||
GO:0035067 | Biological Process | negative regulation of histone acetylation | ||||
GO:0040010 | Biological Process | positive regulation of growth rate | ||||
GO:0045815 | Biological Process | positive regulation of gene expression, epigenetic | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0071558 | Molecular Function | histone demethylase activity (H3-K27 specific) |
Sequence ? help Back to Top |
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Protein Sequence Length: 1279 aa Download sequence Send to blast |
MRSSPPPAPA AELVPPWLKS LPLAPVFRPT AAEFADPVAY IHKIEAAAAP YGICKVVPPL 60 PPPPKKAALS SLSRSFAALH PDDPSPSFPT RHQQLGLCPR RPRPALKPVW RSSHRYTLPQ 120 FESKAAAARK SLLARLNVPA SKQLTPLDHE VLFWRASADR PIVVEYGSDM PGSGFSPCAA 180 QPPAAAARAG EHVGETAWNM CGVARSPGSL LQFMREDVPG VTTPMLYVGM MFSWFAWHVE 240 DHELHSLNYM HLGAGKTWYG VPRDAALAFE EVVREHGYSG EVNPLETFAT LGRKTTVMSP 300 EVLVDMGIPC CRLVQNAGEF VVTFPGSYHC GFSHGFNCGE ASNIATPEWL RIAKEAAIRR 360 ASVNCPPMVS HYQLLYELAL SMRFREPSSG EMGTRSSRLK DKKKCEGEQL VKRMFIQNVI 420 EDNKLLSHLL NDGSSCIILP SNAYGGPVFS ALHSKYQSKL NSGISHDLCN MEEAPEASGC 480 LSLNRNGDTR HCISSDMRNM EGDKGDGLLD QGLLSCVTCG ILSFSCVAVL KPRDCTARYL 540 MSADSNSINN QLCISGGSTL ADAIINERNG VISRPGSERC CNKKMSDDAE IDRNSALDLL 600 AFAYGGQSDS EEDPLKKILQ VAHNSDQLLR GIIESQPKSS SNVGCFGTKL SSSSTESKEI 660 PSSQNARCIG SSVISNGPKG VRTRNKYQLK MVLSEGFQAK DMFSVKEKKV QPEPSSSKGS 720 VKETVDGGTK NDAGYTISVS EHRGSTEDMY SAKDKKVQSE SSNLDGTAKE TVDVSGTEND 780 ARCNSTTISV SEHRGSTPMI NSLATSIVKP DKDSSRMHVF CLEHAIEVEK QLHAIGGSHI 840 ILLCHPEYPK IEVEARLLAE EMGVRYDWKG IHFKEANMED RKKIQEVLQD EEAIPTSSDW 900 AVKLGINLYY SANLAKSPLY NKQMPYNRVI YRAFGCNSQN DLPVKLNTCE RKQSHQKKIA 960 VAGRWCGKVW TSKQVHPYLA HRVESQEGEE ADRICYYRVD EKHKAEPIGN SSRTEASKRK 1020 SSSLTDGTES SNRREEIPGE ETNTKRPKHS EEDNLRALES AAEVVAPSPA GTVLRISSRI 1080 ANRAKKLKSK MAEDDGPSNH PKSNIEEKSS HASGQKSNIQ EENANSASHL RATPPKQKTE 1140 VEAKKQTKIP KAPKQAVEYP CDVDGCSMSF HTKRDLSLHK SDICPVKGCG KKFFSHKYLL 1200 QHRKVHTDDR PLTCPWEGCN MAFKWPWART EHLRVHTGDR PYVCHEPGCA QTFRFVSDFS 1260 RHKRKTGHSV KKKKKKAKS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ip0_A | 1e-73 | 17 | 450 | 8 | 413 | Transcription factor jumonji (Jmj) family protein |
6ip4_A | 1e-73 | 17 | 450 | 8 | 413 | Arabidopsis JMJ13 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Histone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3 with a specific activity for H3K27me3 and H3K27me2. No activity on H3K4me3, H3K9me3, H3K27me1 and H3K36me3. Involved in biotic stress response. May demethylate H3K27me3-marked defense-related genes and increase their basal and induced expression levels during pathogen infection. {ECO:0000269|PubMed:24280387}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00608 | ChIP-seq | Transfer from AT3G48430 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB01G49820.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt stress, abscisic acid (ABA), jasmonic acid (JA), the ethylene precursor ACC and infection by the bacterial pathogen Xanthomonas oryzae pv. oryzae. {ECO:0000269|PubMed:24280387}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068952 | 0.0 | AK068952.1 Oryza sativa Japonica Group cDNA clone:J023001N18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006645195.1 | 0.0 | PREDICTED: lysine-specific demethylase JMJ705-like | ||||
Swissprot | Q5N712 | 0.0 | JM705_ORYSJ; Lysine-specific demethylase JMJ705 | ||||
TrEMBL | J3L6X6 | 0.0 | J3L6X6_ORYBR; Uncharacterized protein | ||||
STRING | OB01G49820.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5346 | 32 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48430.1 | 1e-171 | relative of early flowering 6 |
Link Out ? help Back to Top | |
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Entrez Gene | 102716361 |
Publications ? help Back to Top | |||
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