PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G45620.1
Common NameLOC102704569
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 812aa    MW: 89944.5 Da    PI: 5.89
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G45620.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS379.83.4e-1164368052374
          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                   ++lL++cA+ v+++d + a++lL +++++a  +gd  qRla++f+++L+arla+++s++yk+ ++++ +    +++l+a++l+  ++P+ k+sh  a
  OB01G45620.1 436 ETLLIHCAQSVATDDRRSATELLRQIRHHADAKGDGDQRLAHCFANGLEARLAGTGSQIYKTYTMTRLP---CTDVLKAYQLYLAACPFKKISHYFA 529
                   789************************************************************999999...9************************ PP

          GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                   Nq+I++ave++++vHi+D++i +G+QWp+L+q L++Rp+gpp+lRiTg++ p++g   +e++eetg+ L+++A++++vpfef++ +a r+e++++e+
  OB01G45620.1 530 NQTIMNAVEKAKKVHIVDYGIYYGFQWPCLIQRLSNRPGGPPKLRITGIDTPQPGfrPAERIEETGRYLSDYAQTFNVPFEFQA-IAYRFEAVQIED 625
                   ************************************************************************************.799********* PP

          GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290
                   Lr++ +E+l+Vn++++ ++l+desv  es+r+  Lk++++++P+++++   + ++n++ F++rf eal +ysa+fd+le+++p+ +e+r  +E +l+
  OB01G45620.1 626 LRIEDDEVLIVNCMFKFKNLMDESVVAESPRNMALKTIRKMNPHLFIHGVVNGSYNAPFFVTRFREALFHYSAIFDMLETNIPKGNEQRLLIESALF 722
                   ************************************************************************************************* PP

          GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   +re+ nv++ceg er er et+++W+ r ++aG+k++pl+++++k a+  +r +++d + ++e++ +l++gWk+r L+++S W+
  OB01G45620.1 723 SREAINVISCEGLERMERPETYKQWQVRNQRAGLKQLPLNQDMMKRAREKVRCYHKD-FIIDEDNRWLLQGWKGRILFALSTWK 805
                   *******************************************************77.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.492409786IPR005202Transcription factor GRAS
PfamPF035141.2E-113436805IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 812 aa     Download sequence    Send to blast
MVMDAGVHDV CTLLPGSKRD AHLPMYPQIA AANGFTAEEL DPLLFLSPDA VGVGGDDYLN  60
VVSAAPVSAG STNSASPPRD VSVYAASAAQ HDDSEAFSDI VLGYINRMLM AEDIDEKFEH  120
YPVNAVDLLA AEKPFLEILA DQSRYSGGSS VESPDGSSVT NSCSSLSPCN CSSASDGLGT  180
VPRTPVLEFP TAAFLQTPQL YGDLIPQGAM VESGGAWQYD PTEFYQLQTN PVSGNLLSQS  240
SSFASSNGSS VTFSEGFESL LSPAGVLPDV GLNDFAVQSQ QALQFCRGFQ EASKFLPDES  300
KLVIDVDKFC SGNEGGSFLG EVRQDKKLVK VKTETDDVEA AVHRGRKHFY GDDLDVEEGR  360
CSKHSAPGID TDHLVREMMD KVLLCNGETC SKGVKELREA LQHDVAKHSG GGHGKGSSHG  420
KGRGKKQPKK EVVDLETLLI HCAQSVATDD RRSATELLRQ IRHHADAKGD GDQRLAHCFA  480
NGLEARLAGT GSQIYKTYTM TRLPCTDVLK AYQLYLAACP FKKISHYFAN QTIMNAVEKA  540
KKVHIVDYGI YYGFQWPCLI QRLSNRPGGP PKLRITGIDT PQPGFRPAER IEETGRYLSD  600
YAQTFNVPFE FQAIAYRFEA VQIEDLRIED DEVLIVNCMF KFKNLMDESV VAESPRNMAL  660
KTIRKMNPHL FIHGVVNGSY NAPFFVTRFR EALFHYSAIF DMLETNIPKG NEQRLLIESA  720
LFSREAINVI SCEGLERMER PETYKQWQVR NQRAGLKQLP LNQDMMKRAR EKVRCYHKDF  780
IIDEDNRWLL QGWKGRILFA LSTWKPDNRS SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-4944180624379Protein SCARECROW
5b3h_D4e-4944180624379Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G45620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032400.0AP003240.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0406G08.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644992.10.0PREDICTED: scarecrow-like protein 9
TrEMBLJ3L5Q60.0J3L5Q6_ORYBR; Uncharacterized protein
STRINGOB01G45620.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125183137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-177GRAS family protein