PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G43540.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 361aa    MW: 39278.4 Da    PI: 7.527
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G43540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM27.49.3e-0926261116
           NAM  61 Fskrdkkyatgkrknr.atksgyWkatgkdkevlsk....kgelvglkktLvfykgrapkg 116
                   Fs+r++ky+ gkr++r + + g+Wk+t k+++vl++    +++++g k  L++++ +++++
  OB01G43540.1   2 FSPRSRKYTYGKRPSRsTSHVGFWKSTSKNEPVLETqddgTTKVIGYKGCLTYHELDEKNA 62 
                   99**************55669*************9888777778**********5433332 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-141122IPR003441NAC domain
PROSITE profilePS5100518.6241122IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MFSPRSRKYT YGKRPSRSTS HVGFWKSTSK NEPVLETQDD GTTKVIGYKG CLTYHELDEK  60
NATMAVKPTA GRELKKLSKK DIAIKTPWKM WEFVCSNSNR PCDVGEDPMR LNDWVLCKVT  120
NKEMCQGASK KTQPVNKKQK LRGVVIKQPL ESSWASSSQD TVVQQETPNS SLVVAGGDAA  180
AAVTAVPTPL QMVPPYRSSL HYNTNDSLVI AGGDAAAAED PLVLQTVPPY APSLHYNTNG  240
FLVVSGGDAS VVKDRMPLQM VSLYAPSLHH NTNGSLVVVR APPAVAAMAE DPMPLQMVSP  300
YAPSLHYNTN GFVVDYSTEV AQNSIVVDYN IGVDASYITS DSPVTTANGF VDLQNDSLNY  360
Q
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G43540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLJ3L5480.0J3L548_ORYBR; Uncharacterized protein
STRINGOB01G43540.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP160681414
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.11e-14NAC family protein