PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G42230.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 359aa    MW: 38285.5 Da    PI: 5.9374
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G42230.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.22.2e-06242286554
                   HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   +  + + R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  OB01G42230.1 242 NTLMAKVRKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 286
                   66677899999*************98.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.084237286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.93E-7241291No hitNo description
SuperFamilySSF474599.55E-13241301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.9E-10242295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-6243292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MADEWWSASS SQRSHGTSAC SAPAPPLTDR VSCGWTSPAA AVVAESTSSV TFQDPSRSSA  60
THHQPLSDVA SSLGDPHMDW TQAFLSGRSD ASFHAVLQDD VAASTRSFRA QTTVIDETVM  120
NNPFRDMGVG QGLLLDKASS LASAPYGTVQ LQGLSFDSGE GEPVGAAHNI TTTFGDYQHS  180
ASYDDAAAMQ FSQTPRPSTL PAAAQMQLLS GSYQLPFGSA PPPSQLLLQA MQPKPSCSSN  240
ANTLMAKVRK EKLGDRITAL QQLVSPFGKT DTASVLHEAI EYIKFLHEQV ASLSSPYLKN  300
GNPLQHFQQK GSESSKETGE AKPDLRSRGL CLVPVASTYT VASETVPEFW HPTFGGTFR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G42230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0034064e-86AP003406.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1070A12.
GenBankAP0149574e-86AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126094e-86CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644815.10.0PREDICTED: transcription factor bHLH123-like
TrEMBLJ3L4R70.0J3L4R7_ORYBR; Uncharacterized protein
STRINGOB01G42230.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29703464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.12e-45bHLH family protein