PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G38320.1
Common NameLOC102720941
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 721aa    MW: 82480.5 Da    PI: 5.6583
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G38320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.91.2e-15191031494
                   T-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
            B3  14 grlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                   +rl +p +f+ ++          +   ++s + tl++++g+sW v+l  ++ ++r++lt+GW +Fv++  L++ +f++F++d+++ f  +v
  OB01G38320.1  19 RRLEIPQDFLIHIpevasstsdtS--LPSSAKGTLQNSEGKSWPVEL--ERLDRRVFLTTGWAKFVEDTSLRAYEFLLFRYDENMHF--MV 103
                   469999999988888888777433..3488899**************..********************************998888..54 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.47E-205111IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.286109IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-196111IPR015300DNA-binding pseudobarrel domain
CDDcd100178.45E-147106No hitNo description
SMARTSM010198.3E-129109IPR003340B3 DNA binding domain
PfamPF023629.4E-1319102IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 721 aa     Download sequence    Send to blast
MAGVRRHHFI KVMVGEFARR LEIPQDFLIH IPEVASSTSD TSLPSSAKGT LQNSEGKSWP  60
VELERLDRRV FLTTGWAKFV EDTSLRAYEF LLFRYDENMH FMVLPFGLNA CEKVIQSSGS  120
PEGKLPGDIF CCSKRGRDGD KLTEATYSLT PSHSQVVTLQ RSAQGHEHIS SQSFPDQHEV  180
CGSKDGLDEH LSLKGAIEDD KTNTVAEVMR TLDVDKVTVE LFCAMLIFYK WNVDAVAEDL  240
YICRGKPQIQ NVFLKNKLLF QFDIVKRKLQ NFFLPDDYCS SPILESEKRS LEEPKLSNQP  300
LQCDSTAVKC RLIDEHDLCN FSQNKRRKRG SFCSHETPRR SPRLARQNNS RDNAKDTSKE  360
RSEEQQPSPA STIDQAEGIA EQAWLCHDKM VNGSLFQDSE KVNPVHGDVG LCEEPQHSQG  420
ENEGNLDQVN NKETGEEQTE RNAVDTSESF TRRGCIESLP ASCEVPECSK INELCFTWMP  480
DEHVNSLEKV LLDIQRDNFM KTISHVQGII RNHPIDILTA DVITAVVQKE ILKWDYCLKD  540
RDAQRIVNAL LEHAKKIKDM HNFNSEMRKE EFSTKLQIQL KWQLKELETA YTSLELDYKK  600
ATIDDNIAFS ILHEQKKKLQ NLKGEITGQQ QSLEMKKDEM QKLAHQIADY EIVFQKSLME  660
RLRIKEVMKS YEQTLAEVNV RLTSAEVGSI DVEALVKAEM DNMTKEIEMS KESVLNITFK  720
K
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G38320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2430920.0AK243092.1 Oryza sativa Japonica Group cDNA, clone: J100023B20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006646276.10.0PREDICTED: B3 domain-containing protein Os03g0120900-like
SwissprotQ5JNA10.0Y1237_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLJ3L3M60.0J3L3M6_ORYBR; Uncharacterized protein
STRINGOB01G38320.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132352630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16640.11e-10B3 family protein