 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OB01G38300.1 |
| Common Name | LOC102719906 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
B3 |
| Protein Properties |
Length: 401aa MW: 45088.5 Da PI: 10.5779 |
| Description |
B3 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OB01G38300.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | B3 | 63.3 | 4e-20 | 21 | 120 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
ffkvl + ++rl +p +f++++ ++ ke s+ tle +sgr+W v + ++ +++++t+GW +Fv+++ L++ +fvvF++dg++
OB01G38300.1 21 FFKVL--VGDF-KQRLKIPPNFCKHIpweesskaKSLKEASMAATLEGPSGRTWLVVI--HRTTEGTFFTSGWPKFVQDQALRDLEFVVFRYDGNTH 112
56666..3444.457********888***999996666799*****************..9*********************************999 PP
E..EEEEE-S CS
B3 90 felvvkvfrk 99
f + +vf++
OB01G38300.1 113 F--TAMVFDR 120
9..6666665 PP
|
| 2 | B3 | 51 | 2.7e-16 | 292 | 378 | 5 | 98 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
+++ +v s ++++p f ++h ++e ++++l+d+ g+ W v +i ++++r l++GW F++ n L+egD +vF+l+ ef +v++fr
OB01G38300.1 292 MSTMHVYYSFMMRFPTGFSRQHL--PRERTDVVLRDPGGKAWVVLYI-PNTRDR--LSRGWCAFARGNCLEEGDYCVFELVAAAEF--RVHIFR 378
6788999999*********9995..345679***************4.444455..9**********************9986666..999998 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 401 aa
Download sequence Send
to blast |
MPGAGGTTKS LWASAERRPH FFKVLVGDFK QRLKIPPNFC KHIPWEESSK AKSLKEASMA 60
ATLEGPSGRT WLVVIHRTTE GTFFTSGWPK FVQDQALRDL EFVVFRYDGN THFTAMVFDR 120
TACEREDLIG GGGDRPRKKR GRRPRDASRD TPRPKKDSVG KELVTYRASP SGQQLQILDS 180
NWTTEPGSAA VKNEEDAEEP PLRALPAAPA QRASPRRVPE GALDVDGAAA RRGSVKTRSL 240
QDDLALASIP PSIQRYKGYV SRRRPVTTAE RQRATEIAHA FRSPLPYCVI RMSTMHVYYS 300
FMMRFPTGFS RQHLPRERTD VVLRDPGGKA WVVLYIPNTR DRLSRGWCAF ARGNCLEEGD 360
YCVFELVAAA EFRVHIFRVV EPAVPAVRLR RVTVTCSRGT T
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | CP012609 | 1e-168 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
