PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB01G37310.1

Common Name

LOC102704010

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 386aa MW: 39929.4 Da PI: 6.6943

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB01G37310.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.4	2e-06	287	327	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+r+ +++ L++l+P K++ a++L +A Y+k L OB01G37310.1 287 ARLRRERVSDRLRVLQKLVPGG-----SKMDTASMLDEAASYLKFL 327 599***************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.24E-10	269	332	No hit	No description
PROSITE profile	PS50888	14.411	278	327	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.66E-13	284	337	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.4E-12	284	333	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.1E-10	287	336	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
METFGWAGGG QLHDDVYFPR SVGCGRFELD DAFLGACFGS QLQYCDDGGV GAGGGHVGDD 60 GGCLQGASGF GAMGDPLGLL CSGDMFASVA EGAGTHDEGL LDAALAFSRK LGAPCDGISD 120 GGAVSNGAML SSYSGTTGGN ISSGESNNYS GGCYDAEVVS PTSTMSPTTT SLTQPPLHHP 180 KRKLYDDHPA IAAAAAAPPF APRPNLGAAV KRKASTSATS ITFVQPCHHH DPTAAGYEPD 240 VEAMAQVKEM IYRAAAMRPV HLGTEAAADK PRRKNVRISS DPQTVAARLR RERVSDRLRV 300 LQKLVPGGSK MDTASMLDEA ASYLKFLKSQ VQKLETLGTS SSTAKLQHHY YGGGSSSSSH 360 GMLAFAANNN TISGYANSNG NATKLL

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

METFGWAGGG QLHDDVYFPR SVGCGRFELD DAFLGACFGS QLQYCDDGGV GAGGGHVGDD  60
GGCLQGASGF GAMGDPLGLL CSGDMFASVA EGAGTHDEGL LDAALAFSRK LGAPCDGISD  120
GGAVSNGAML SSYSGTTGGN ISSGESNNYS GGCYDAEVVS PTSTMSPTTT SLTQPPLHHP  180
KRKLYDDHPA IAAAAAAPPF APRPNLGAAV KRKASTSATS ITFVQPCHHH DPTAAGYEPD  240
VEAMAQVKEM IYRAAAMRPV HLGTEAAADK PRRKNVRISS DPQTVAARLR RERVSDRLRV  300
LQKLVPGGSK MDTASMLDEA ASYLKFLKSQ VQKLETLGTS SSTAKLQHHY YGGGSSSSSH  360
GMLAFAANNN TISGYANSNG NATKLL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	268	274	DKPRRKN
2	269	274	KPRRKN
3	287	292	RLRRER

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the negative regulation of flowering. May be involved in the repression of the flowering factor GI and HD1 by interacting with PIL13 and PIL15 and competing with PRR1. Possesses transactivation activity in yeast. {ECO:0000269\|PubMed:21549224}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB01G37310.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK100208	1e-176	AK100208.1 Oryza sativa Japonica Group cDNA clone:J023042H10, full insert sequence.
GenBank	AK106119	1e-176	AK106119.1 Oryza sativa Japonica Group cDNA clone:001-207-E08, full insert sequence.
GenBank	AP003273	1e-176	AP003273.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0510F09.
GenBank	AP003381	1e-176	AP003381.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0692C11.
GenBank	AP014957	1e-176	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006644587.1	0.0	PREDICTED: uncharacterized protein LOC102704010
Swissprot	A0A0P0WQ90	2e-53	LF_ORYSJ; Transcription factor LATE FLOWERING
TrEMBL	J3L3C5	0.0	J3L3C5_ORYBR; Uncharacterized protein
STRING	OB01G37310.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1546	37	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	1e-35	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	102704010

Publications ? help Back to Top
Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. N Biotechnol, 2011. 28(6): p. 788-97 [PMID:21549224]