PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G32770.1
Common NameLOC102716356
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 323aa    MW: 35413.3 Da    PI: 7.1026
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G32770.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.71.8e-33241152102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F+ k+y+++ d++++ l++w +++nsfv++d+  f++ +Lp +Fkh nf+SFvRQLn+YgF+kv+ ++         weF+h+sF +g+++ll++i 
  OB01G32770.1  24 FVAKTYQMVCDPRTDALVRWGRENNSFVIVDPAAFSQLLLPCFFKHGNFSSFVRQLNTYGFRKVHPDR---------WEFAHESFLRGQTHLLSRIA 111
                   9********************999*****************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k+
  OB01G32770.1 112 RRKK 115
                   *997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.1E-3619113IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.24E-3320113IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-5220113IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.9E-2924113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-162447IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-166274IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406387IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-167587IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MDGLHTELAL GLIGGDGQQQ TAPFVAKTYQ MVCDPRTDAL VRWGRENNSF VIVDPAAFSQ  60
LLLPCFFKHG NFSSFVRQLN TYGFRKVHPD RWEFAHESFL RGQTHLLSRI ARRKKRGDQG  120
GGASCSFGGF NGAGEQHAAS NMGMFGEEAA AEDVLANEAA LFEEVQRLRH KQTAIGEDLA  180
RMSQRLQATE RRPDQLMSFL AKLADDPNAV TGHLLEQVAE RKRRRKHLPP HEPTVSPLPP  240
APPPPQQPLL ALAGAAAMEG TWQWTTEHQI KPMTMLPSLE PPTASCGVQK VPELGGGGVM  300
GLTDGEAKVE PPFPFCLLGQ AFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-221411319129Heat shock factor protein 1
5d5v_B1e-221411319129Heat shock factor protein 1
5d5v_D1e-221411319129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1220224RKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G32770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0694790.0AK069479.1 Oryza sativa Japonica Group cDNA clone:J023019J23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644390.10.0PREDICTED: heat stress transcription factor C-1a-like
SwissprotQ6VBA41e-174HFC1A_ORYSJ; Heat stress transcription factor C-1a
TrEMBLJ3L2210.0J3L221_ORYBR; Uncharacterized protein
STRINGOB01G32770.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.13e-60heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]