PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G20470.1
Common NameLOC102701585
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Dof
Protein Properties Length: 528aa    MW: 57821.3 Da    PI: 4.6855
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G20470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.39.1e-40146205261
        zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                   ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrk+k+s
  OB01G20470.1 146 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKSKSS 205
                   7899*****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-31143203IPR003851Zinc finger, Dof-type
PfamPF027013.1E-32148204IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.863150204IPR003851Zinc finger, Dof-type
PROSITE patternPS013610152188IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MCDKDPGIRL FGRVIPLAEA AAAAEAERAQ DEDQHREIEE TNDNEMKVDV PQEKEDDEMK  60
VDAPEEKKDN EVTADAPQEE KDDEMGVDAS QSTDSVEPVS TSTLDNSKED QGQMNNVEGK  120
AASDSKEENE KTANDESGQD KVLKKPDKIL PCPRCNSMDT KFCYYNNYNV NQPRHFCKNC  180
QRYWTAGGTM RNVPVGAGRR KSKSSSLHYR HLLMAPDCMM GSRVDISRSV NPEAFGSSHS  240
TPIQPIGRNE AVLKFGPEVP LCESMASVLS IKEQNVTNTG AVPASENQED NSCASSITSY  300
NMLPENAVPV DKNGAPVYCN GVNSPMPQYY LGAPYMYPWG IGWNNLPMMV PAKGMSESAS  360
PSESCSTIPA PWMNSPLMPP SRLPAPAFPY PLVPPALWGC LSSWPATTWN IPWIRTNDCM  420
SPSSSSNSSC SGNGSPLGKH SRDSHPLREE KEEKSLWIPK TLRIDDPDDA AKSSIWATLG  480
IKPGDPGIFK PFQSKGESKV QTSDSRPARA LQANPAAMSR SQSFQETS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00046PBMTransfer from AT5G39660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G20470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644026.20.0PREDICTED: cyclic dof factor 2-like
TrEMBLJ3KYJ10.0J3KYJ1_ORYBR; Uncharacterized protein
STRINGOB01G20470.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143438116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.23e-71cycling DOF factor 2