PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G20290.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 516aa    MW: 57115.6 Da    PI: 4.9592
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G20290.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.51.5e-50251521128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                   lppGf FhP+d el+++yLkkkv+g+++e  ++i+ vdiyk+ePwdLp+  +v +++++w+fF+ rd+ky++g r+nrat +gyWk+tgkd++++  
  OB01G20290.1  25 LPPGFGFHPKDTELISHYLKKKVHGQQIEH-DIIPVVDIYKHEPWDLPEkcNVPTQDNKWHFFAARDRKYPNGARSNRATVAGYWKSTGKDRTIKM- 119
                   79**************************99.99***************5346667999*************************************9. PP

           NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                   +++++g+kktLvf++gr p+g++t+W+mhey +
  OB01G20290.1 120 GKRTIGTKKTLVFHEGRPPSGRRTEWIMHEYYI 152
                   999****************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.41E-5818174IPR003441NAC domain
PROSITE profilePS5100554.84925175IPR003441NAC domain
PfamPF023651.4E-2426151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MGIGCDPVEF RVVICRMDSL RDIVLPPGFG FHPKDTELIS HYLKKKVHGQ QIEHDIIPVV  60
DIYKHEPWDL PEKCNVPTQD NKWHFFAARD RKYPNGARSN RATVAGYWKS TGKDRTIKMG  120
KRTIGTKKTL VFHEGRPPSG RRTEWIMHEY YIDERECQAC PDMKDAFVLC RVTKREDWIS  180
GNGHELDNTD PPELNDDPTP VISPQQPDPA ASSVVGTEQR NGEPTSVTVA ESPEGVTSSA  240
ITADQASHTD GINIDEWLEE LFDPSFNPEQ DLASADLSRD EQNVESSNIS ALAPKVEQVY  300
SSPNQNVADD TDYLLAEDLY NILNPGTDDF NMLQHPIDQE MLAFPCVYPS GALDPCDLAN  360
SLGNGTQKEL WSPQDNSEPT QANEAADNGI TIRNREGKIP TTSVPQYKGR RHAKIQVGIN  420
KMATSSSESI NQTFTFESSS SCLVEHQKNR EHDATTPSKR SDAVKPLCSN GGLLRSIRNA  480
FTGCSEAGSN VILITVFAVG VAAVALHVGQ RLGFRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-43181788172Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G20290.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0281870.0AB028187.1 Oryza sativa mRNA for OsNAC8 protein, complete cds.
GenBankAK1028080.0AK102808.1 Oryza sativa Japonica Group cDNA clone:J033108J08, full insert sequence.
GenBankGU1203470.0GU120347.1 Oryza sativa Japonica Group clone KCS602B05 NAC8 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644021.10.0PREDICTED: NAC domain-containing protein 74-like isoform X1
SwissprotQ7GCL70.0NAC74_ORYSJ; NAC domain-containing protein 74
TrEMBLJ3KYH30.0J3KYH3_ORYBR; Uncharacterized protein
STRINGOB01G20290.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75603847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.12e-65NAC domain containing protein 57
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]