PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G19570.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 1016aa    MW: 118378 Da    PI: 9.7634
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G19570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57342.61.7e-131532069
        DUF573 20 idfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkv 69
                  ++f+a++g+   +++ d+  fy+ +++++sf+++ksql+eK+rrLKkK++ + 
  OB01G19570.1  1 LEFTARRGTtfASHQyDTGPFYDEIRRKLSFEFTKSQLIEKLRRLKKKYRVCX 53
                  5799999998877777*********************************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.7E-10253IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 1016 aa     Download sequence    Send to blast
LEFTARRGTT FASHQYDTGP FYDEIRRKLS FEFTKSQLIE KLRRLKKKYR VCXXXXXXXX  60
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  120
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  180
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  240
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  300
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  360
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  420
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  480
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  540
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  600
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  660
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  720
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  780
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  840
TPTPTPTPTP RGKGGRRVRR RIAQEPEAPA LLPSTPSLIL TDGAHQESLV AAMGNSIPRI  900
AHLPPVSESA PVPVTASGAN EEAVRCILSP LLKEFISSVA MAGQAGAGLG LGMGFGAAGC  960
ADIAGLFGIA SMNPGVPNVD KWKQQQILEL EVYLKRIELM REQVTAALEE LRSSEG
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G19570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0728862e-56AK072886.1 Oryza sativa Japonica Group cDNA clone:J023149P13, full insert sequence.
GenBankAP0012782e-56AP001278.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, clone:P0434D08.
GenBankAP0149572e-56AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126092e-56CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.24e-11DNA-binding storekeeper protein-related transcriptional regulator