PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G18800.1
Common NameLOC102707619
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 618aa    MW: 67153.6 Da    PI: 7.243
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G18800.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-12464510455
                   HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                   +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  OB01G18800.1 464 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 510
                   799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.9E-5060245IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.831460509IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.80E-15463514No hitNo description
SuperFamilySSF474591.13E-18463526IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-18464522IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-10464510IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-16466515IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MVMKMEAEED GANGGTGGTW TEEDRALSAS VLGTDAFAYL TKGGGAISEG LVAASLPVDL  60
QNRLQELVES ERPGVGWNYA IFWQLSRTKS GDLVLGWGDG SCREPRDGEV GAAASADNDE  120
AKQRMRKRVL QRLHSAFGGV DEEDYAPGID QVTDTEMFFL ASMYFAFPRR AGGPGQVFAA  180
GVPLWIPNTE RSVFPANYCY RGHLANAAGF RTIVLVPFET GVLELGSMQQ VAESSDTLQT  240
IRSVFAGAIG NKAGVQRHEG NGPADKSPGL AKIFGKDLNL GRPSAGPGAG VSKADERSWE  300
QRIAAGGSSL LPNVQRGLQN FTWSQARGLN SHQQKFGNGL LIVSNEATPR NNGVVESPTA  360
TQFQLQKAPP LQKLPKLQKP QQLVKPQQLV SQQQLQPQAP RQIDFSAGSS SKPGVLTKRP  420
AGIDGESAEV DGLCKDEGPP PAIEDRRPRK RGRKPANGRE EPLNHVEAER QRREKLNQRF  480
YALRAVVPNI SKMDKASLLG DAITYITDLQ KKLKEMEAER ERFLESGMVD PRERTPRPEV  540
DIQVVQDEVL VRVMSPMENH PVKTVFQAFE EAEVHAGESK ITSNNGTAVH SFIIKCPGAE  600
QQTREKVIAA VSRAMSSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-28458520264Transcription factor MYC2
5gnj_B7e-28458520264Transcription factor MYC2
5gnj_E7e-28458520264Transcription factor MYC2
5gnj_F7e-28458520264Transcription factor MYC2
5gnj_G7e-28458520264Transcription factor MYC2
5gnj_I7e-28458520264Transcription factor MYC2
5gnj_M7e-28458520264Transcription factor MYC2
5gnj_N7e-28458520264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1445453RRPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G18800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006643964.10.0PREDICTED: transcription factor bHLH13
TrEMBLJ3KY240.0J3KY24_ORYBR; Uncharacterized protein
STRINGOB01G18800.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.33e-71bHLH family protein