PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G16440.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 167aa    MW: 18166 Da    PI: 5.66
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G16440.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.26.5e-1661104350
           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaar 50 
                   y+GVr +  +g+Wv+eIr+p++   + r++lg+f  +e+Aa+a+++a 
  OB01G16440.1  61 YRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPCPEMAARAHDHAE 104
                   9****998.**********843...6*******************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.5E-2160110IPR001471AP2/ERF domain
PROSITE profilePS5103217.64960103IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-2360104IPR001471AP2/ERF domain
PfamPF008471.6E-1060103IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-1561105IPR016177DNA-binding domain
CDDcd000188.73E-2061103No hitNo description
PRINTSPR003671.8E-96172IPR001471AP2/ERF domain
PRINTSPR003671.8E-98399IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MAASEQSSES SAATTTTSYS SCSPASTTSS RSRAADGGGG AKRQQVGKRK RDGEAAAAAS  60
YRGVRMRAWG KWVSEIREPR KKSRIWLGTF PCPEMAARAH DHAEPSTENE QQQPATAAAQ  120
VAVAELVFDE LAPLWMEDVV DFGPSDHCWT AYDALDHVGF QPLLWEY
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G16440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1088738e-67AK108873.1 Oryza sativa Japonica Group cDNA clone:002-152-C11, full insert sequence.
GenBankAP0031978e-67AP003197.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1015E06.
GenBankAP0149578e-67AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAY3393748e-67AY339374.1 Oryza sativa (japonica cultivar-group) Ap21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006645611.12e-40PREDICTED: ethylene-responsive transcription factor ERF035-like
TrEMBLJ3KXD81e-119J3KXD8_ORYBR; Uncharacterized protein
STRINGOB01G16440.11e-120(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.13e-24ERF family protein