PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G16410.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 860aa    MW: 92898.4 Da    PI: 6.077
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G16410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.89.1e-191876357
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
      Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                  k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  OB01G16410.1 18 KYVRYTPEQVEALERLYYECPKPSSLRRQQLVRECpvlaNVDPKQIKVWFQNRRCREKQ 76
                  6789*****************************************************97 PP
2START167.97.1e-531713762202
                   HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEE CS
         START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmva 96 
                   +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++ g a+ra+g+v m++a  v+e+l+d++ W ++++++++++v+  g  g+++l ++
  OB01G16410.1 171 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCAGVAARACGLVGMEPA-KVAEILKDRALWLRDCRSMDVVNVLPAGsnGTIELLYM 266
                   6899******************************************************.8888888888**************************** PP

                   XXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHH CS
         START  97 elqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksgl 189
                   +l+a+++l+p Rdf+  Ry+  l +g++v++++S++s+q  p+    ++++R+e+lpSg+li+p+++g+s +++v+h+dl+ +++++++r+l++s++
  OB01G16410.1 267 QLYAPTTLAPaRDFWLMRYTSILDDGSLVVCERSLSSKQGGPSmplVQPFIRGEMLPSGFLIRPSDGGGSVIHIVDHMDLEPWSVPEVVRPLYESSA 363
                   ******************************************999999************************************************* PP

                   HHHHHHHHHHTXX CS
         START 190 aegaktwvatlqr 202
                   + ++k+ +a  ++
  OB01G16410.1 364 MVAQKMSMAVAHE 376
                   *******998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.5321377IPR001356Homeobox domain
SMARTSM003893.7E-151581IPR001356Homeobox domain
PfamPF000462.2E-161876IPR001356Homeobox domain
CDDcd000863.89E-161878No hitNo description
SuperFamilySSF466899.84E-171979IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.1E-182076IPR009057Homeodomain-like
CDDcd146864.22E-670109No hitNo description
PROSITE profilePS5084824.064161362IPR002913START domain
CDDcd088752.25E-69165374No hitNo description
Gene3DG3DSA:3.30.530.202.1E-21168355IPR023393START-like domain
SMARTSM002346.2E-42170380IPR002913START domain
PfamPF018521.4E-50171376IPR002913START domain
SuperFamilySSF559611.21E-34171364No hitNo description
PfamPF086705.8E-47713858IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 860 aa     Download sequence    Send to blast
MVAATAREAA LAAMDASKYV RYTPEQVEAL ERLYYECPKP SSLRRQQLVR ECPVLANVDP  60
KQIKVWFQNR RCREKQRKES SRLQALNRKL TAMNKLLMEE NDRLQKQVSQ LVYENGYYRH  120
HGSAGQLATT DTSCESVVTS GQHHHNVVQP PPPPPPLPPP RDGSPAGLMA IAEETLTEFL  180
SKATGTAVEW VQMPGMKPGP DSIGIIAISH GCAGVAARAC GLVGMEPAKV AEILKDRALW  240
LRDCRSMDVV NVLPAGSNGT IELLYMQLYA PTTLAPARDF WLMRYTSILD DGSLVVCERS  300
LSSKQGGPSM PLVQPFIRGE MLPSGFLIRP SDGGGSVIHI VDHMDLEPWS VPEVVRPLYE  360
SSAMVAQKMS MAVAHEDTRS VITGWGRQPA ALRALSQKLT RGFNEALNGL ADDGWSVIES  420
DGVDDVCVSV NSSKVIGSSN AAFNNGLPMV STGVLCAKAS MLLQVSITLK LDSVDVSPPA  480
LLQFLREHRS QWADSNLDAF FASAMKPNFC NLPMNRLGGF SGQVILPLAH TFEPEEFLEV  540
IKLGNASNYQ DTLVHRDLFL LQMYNGVEES TAGTCSELIF APIDASFSDD SPLLPSGFRI  600
IPIDSPLDTS SPNCTLDLAS TLEAATPRSR ISGVNGGGGG GACAAASPKA VMTIAFQFAF  660
ESHLQDSVAA MARQYMRSII SSVQRIAVAL SSSRLAVPRA GAQLAPATSE AATLSRWICQ  720
SYRFHFGAEL IKPADANSSS TSESILKSVW HHASAILCCS LKAMPAFTFA NQSGLDMLET  780
TLAALQDMTL EQVFDEQGRK NLCTELPSIM EQGMACMAGG ACVSSAGRAA PYEKVVAWKV  840
AGDDGAAHCI CFMFLNWSLL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G16410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB3742070.0AB374207.1 Oryza sativa Japonica Group OSHB5 mRNA for class III homeodomain-leucine zipper protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693848.10.0PREDICTED: homeobox-leucine zipper protein HOX29
SwissprotA2WLR50.0HOX29_ORYSI; Homeobox-leucine zipper protein HOX29
TrEMBLJ3KXD50.0J3KXD5_ORYBR; Uncharacterized protein
STRINGOB01G16410.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein