PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G14640.1
Common NameLOC102709044
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 283aa    MW: 30481.3 Da    PI: 8.6874
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G14640.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.73.2e-066893126
                  --S---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                  ykt+lC +f  +G C y + C+FaHg
  OB01G14640.1 68 YKTRLCETFVSSGRCMYEGGCTFAHG 93
                  9************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.108.0E-146199IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-96699IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.1926795IPR000571Zinc finger, CCCH-type
SMARTSM003560.0526794IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.976153181IPR000571Zinc finger, CCCH-type
SMARTSM003560.02153180IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.8E-5156178IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-5156179IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MAGWGGMERE RERERERERE SNRRREPEDV IVLSPGPSVR RRPPPAPVAK AAAVEVEMEY  60
QPPEKLFYKT RLCETFVSSG RCMYEGGCTF AHGSDELRPS LTACAGGWRR TASSGAPLPP  120
PPPPPPPPPP PAVAAQAVHD LARGSVSGGG GHRSITKVCF EFRDKGTCHF GETCAFPHVS  180
AAEIRQGSRL SMSSSASELP ARRSMAGTVP RTFDSVPPVA PPSRVGGNNN SIGYGGASSM  240
PAAGSDDHQQ PDQEGRKLTR LEILSRKKMT GIYGDWLDGF VHP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1818RERERERERER
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G14640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1076622e-90AK107662.1 Oryza sativa Japonica Group cDNA clone:002-131-G11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006645553.10.0PREDICTED: zinc finger CCCH domain-containing protein 1-like
SwissprotQ5VR076e-77C3H1_ORYSJ; Zinc finger CCCH domain-containing protein 1
TrEMBLJ3KWV80.0J3KWV8_ORYBR; Uncharacterized protein
STRINGOB01G14640.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133642030
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]