PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G12610.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 271aa    MW: 28832.6 Da    PI: 9.9388
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G12610.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B397.21e-3084183190
                   EEEE-..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                   f+k+ tpsdv+k++rlv+pk++ae+h             + +++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL++gD++vF+++  
  OB01G12610.1  84 FEKAVTPSDVGKLNRLVVPKQHAEKHfplrrspdsaAAATGKGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRAGDTIVFSRSAY 180
                   89***************************999988855667999*************************************************7654 PP

                   SEE CS
            B3  88 sef 90 
                     +
  OB01G12610.1 181 GPE 183
                   444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-3980199IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.94E-3181191IPR015300DNA-binding pseudobarrel domain
CDDcd100175.87E-3082178No hitNo description
SMARTSM010196.7E-2484193IPR003340B3 DNA binding domain
PROSITE profilePS5086314.18484193IPR003340B3 DNA binding domain
PfamPF023625.3E-2884184IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MGVDTISSSS SDSSGASTAT TESGGGAVQL LSVVEPAAAV DALPVVVGGD SSTVDDVVTS  60
KPAAAQQSSR YKGPTPSWAR EPLFEKAVTP SDVGKLNRLV VPKQHAEKHF PLRRSPDSAA  120
AATGKGVLLN FEDGEGKVWR FRYSYWNSSQ SYVLTKGWSR FVREKGLRAG DTIVFSRSAY  180
GPEKLLFIDC KKNKTAAAAA TTTTCTAANS EKPSEARVVR LFGVDIAGGE GRKRERTLEM  240
AAALERGQEA FLLKRQCVVH QRSPALGALL L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-508119111115DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G12610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2116061e-137AC211606.1 Oryza glaberrima clone OG_BBa0048H17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693577.11e-174PREDICTED: AP2/ERF and B3 domain-containing protein Os01g0141000-like
SwissprotQ9AWS01e-104Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000
TrEMBLJ3KWA50.0J3KWA5_ORYBR; Uncharacterized protein
STRINGOB01G12610.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-53related to ABI3/VP1 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]