PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB01G10850.1
Common NameLOC102712202
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 273aa    MW: 28834.3 Da    PI: 7.9091
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB01G10850.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.61.3e-09190233755
                   HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   ++ + RR+ri +++  L++l+P+      +K++ +++LekA++Y+k Lq
  OB01G10850.1 190 AAAKVRRERISERLKVLQDLVPNG-----TKVDLVTMLEKAINYVKFLQ 233
                   56699*****************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.748183232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.16E-13183244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-11188241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-11189238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.92E-12189237No hitNo description
PfamPF000101.8E-6191233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MMAAQASSKR ATLREPLLYD DDEASMPLEL FGYHGGSGDA DYYYSWSGST SSSSSSVLSF  60
DQAATGCARQ LAFHSGGDDE YCTAMWMDAA AGMVENPSVA GNYCHRAQLH GAASFGLASP  120
GSSADTGLDI HDSNVSKPPP AAKAAQKRSC PGGEARAAGK KQCRKGSKAS KAASAPAPAT  180
PTNKDHPQSA AAKVRRERIS ERLKVLQDLV PNGTKVDLVT MLEKAINYVK FLQLQVKVLA  240
TDEFWPAQGG KAPELSQVKD ALDAILSSQH PNK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB01G10850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1085871e-121AK108587.1 Oryza sativa Japonica Group cDNA clone:002-146-B03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006643664.10.0PREDICTED: transcription factor bHLH81-like
TrEMBLJ3KVS90.0J3KVS9_ORYBR; Uncharacterized protein
STRINGOB01G10850.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.18e-47ROOT HAIR DEFECTIVE6