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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB0081G10010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 278aa MW: 29323.5 Da PI: 4.7566 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.6 | 2.2e-08 | 188 | 230 | 8 | 55 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + + RR+ri +++ eL+el+P +K++ +++L kA+ Y+k +q OB0081G10010.1 188 AAKSRRERISERLRELQELVPGG-----GKVDMVTMLDKAIAYVKFMQ 230 5689*****************87.....8****************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.07E-13 | 177 | 240 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.9E-12 | 177 | 238 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.61E-12 | 178 | 234 | No hit | No description |
PROSITE profile | PS50888 | 15.123 | 180 | 229 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.0E-10 | 186 | 235 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-5 | 188 | 230 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MDPAMSWNDG VVAVDDPDTT GPFDAGYIPY PCQYYYDHQT CTEEAELPVG AFLGGEPTRG 60 DAGGVSFSNA AAAAAGATSP SSSSAITFDG EEYSAVSWLD VDTHATEPRL LGYGAPAGKG 120 TSTTRCLSFG SSGDSGGMVT TTTTITTRSG ATSSSQKRAR ARPSPSPGAE LLRGYSKKQR 180 AREPQSSAAK SRRERISERL RELQELVPGG GKVDMVTMLD KAIAYVKFMQ LQLRVLETDA 240 FWPAADGAAP DISQVKDALD ALILCSSSSQ QRLVDRAS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB0081G10010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT836278 | 1e-94 | CT836278.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA023K08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006664961.1 | 0.0 | PREDICTED: transcription factor bHLH83-like | ||||
Swissprot | Q9C707 | 9e-38 | BH083_ARATH; Transcription factor bHLH83 | ||||
TrEMBL | J3KUT8 | 0.0 | J3KUT8_ORYBR; Uncharacterized protein | ||||
STRING | OB0081G10010.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18801 | 8 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66470.1 | 3e-27 | ROOT HAIR DEFECTIVE6 |