PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

OB0072G10050.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 383aa MW: 41285.6 Da PI: 10.5766

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB0072G10050.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.8e-05	279	301	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++Cg+ F +k+ L+rH++ H OB0072G10050.1 279 HDCTKCGRDFLSKDALNRHMQHH 301 56******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.11E-5	278	306	No hit	No description
SMART	SM00355	0.0062	279	301	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.926	279	306	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	281	301	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MAPVPVRIPS PESKPSAASH HFHAKRRSLC GPAEGGERCA IIGGQRRGTH ARWRRGSQSM 60 PSSPPHVGAN TDELVGGCYG QQSSRSNSSP GAAPTEGWIQ GAAPAQSHSD AIQVEGDGGR 120 VQVRLASSSS VVVPTDLSSN SYLVTMVEKK RKSGESSLKN ADDLGTIGLL ANWASTNHQS 180 QRNVFHGLEE APELPRRAHI EAHGKAQLVS LSLTLGQHEQ AGLTLAMKPP TIPPIGHMGN 240 NKETWATKMR KGTRYASSSW TPMLRDLHSW ANKKRAMLHD CTKCGRDFLS KDALNRHMQH 300 HYPGQPIGLV AGTSTGVFLS TGIAMAVNAT SIEGRSHPIT FSVTNNKEVK PQRMAGSVLN 360 NIHRGFRLFG VNIVESPREE PMK

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MAPVPVRIPS PESKPSAASH HFHAKRRSLC GPAEGGERCA IIGGQRRGTH ARWRRGSQSM  60
PSSPPHVGAN TDELVGGCYG QQSSRSNSSP GAAPTEGWIQ GAAPAQSHSD AIQVEGDGGR  120
VQVRLASSSS VVVPTDLSSN SYLVTMVEKK RKSGESSLKN ADDLGTIGLL ANWASTNHQS  180
QRNVFHGLEE APELPRRAHI EAHGKAQLVS LSLTLGQHEQ AGLTLAMKPP TIPPIGHMGN  240
NKETWATKMR KGTRYASSSW TPMLRDLHSW ANKKRAMLHD CTKCGRDFLS KDALNRHMQH  300
HYPGQPIGLV AGTSTGVFLS TGIAMAVNAT SIEGRSHPIT FSVTNNKEVK PQRMAGSVLN  360
NIHRGFRLFG VNIVESPREE PMK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB0072G10050.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	J3KUQ6	0.0	J3KUQ6_ORYBR; Uncharacterized protein
STRING	OB0072G10050.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16216	12	13