PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB0040G10040.1

Common Name

LOC102708023

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GeBP

Protein Properties

Length: 592aa MW: 63493.9 Da PI: 9.9208

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB0040G10040.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	33.1	1.5e-10	187	281	2	98
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisf.kvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 +++ lw+ D i +L + +++g+ + d+++ + ++++ +++k+ + eK+r+LKk++ kk +++ + ++e+d +++ls+ i OB0040G10040.1 187 KARTLWTTADAIKILEIHVAHLKNHGTL--PNADEIIGAAGDNLDRkNITKTGIYEKVRSLKKRYAATTKK-FEESGNLPDEEDDLRMYQLSSEI 278 56789*********999998888865..6777999999999976168999**************9.44444556788889******* PP DUF573 96 Wgs 98 Wg+ OB0040G10040.1 279 WGK 281 *95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	5.6E-17	190	280	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 592 aa Download sequence Send to blast
MARKRRAPPL PPPEAEPSDD SIGEEEKEEG ESPAAPAPQK PSDHGVASSE DNSDMDTYAQ 60 GFQLQMLGGA PHEEEEVGEA GGGSLESEPV RKEAATKAKS EASAKKAKSE ALAKKNKKKR 120 EASPEPAPSG KAKKAKAEKA AAPERTLSGK SKKAAKAAAG KAAAADTETA PSRKAKKSKS 180 KSKSEKKART LWTTADAIKI LEIHVAHLKN HGTLPNADEI IGAAGDNLDR KNITKTGIYE 240 KVRSLKKRYA ATTKKFEESG NLPDEEDDLR MYQLSSEIWG KDAKKDISAL ASQNNGTPTK 300 SKKRQVQAKK DKVDGDSKED ATAVNENGGT LAENKKGKAT KQKTGAEAKI GSSKETAPTA 360 SPSKSKKGNH KDKLKEESKS GKSKETATNA TQGDGTLVGT NMGKADKGKL DGDTENVVPT 420 EATTIATHGD GTLVVTKKRK ADKGKSDGDT QNVIPTEATT IATHADDTLV VSKKGKADRG 480 RLDGDTQNVM SKEATTNSKG RENHEEVLHK EANETNIRRE FIELQTLYPN LASFVNGLEV 540 PHQSIFKRSF ELISDDEACT LETKIKNQRI DEVKMQLRLA NTRKAVVEAF FG

Sequence ? help Back to Top

Protein Sequence Length: 592 aa Download sequence Send to blast

MARKRRAPPL PPPEAEPSDD SIGEEEKEEG ESPAAPAPQK PSDHGVASSE DNSDMDTYAQ  60
GFQLQMLGGA PHEEEEVGEA GGGSLESEPV RKEAATKAKS EASAKKAKSE ALAKKNKKKR  120
EASPEPAPSG KAKKAKAEKA AAPERTLSGK SKKAAKAAAG KAAAADTETA PSRKAKKSKS  180
KSKSEKKART LWTTADAIKI LEIHVAHLKN HGTLPNADEI IGAAGDNLDR KNITKTGIYE  240
KVRSLKKRYA ATTKKFEESG NLPDEEDDLR MYQLSSEIWG KDAKKDISAL ASQNNGTPTK  300
SKKRQVQAKK DKVDGDSKED ATAVNENGGT LAENKKGKAT KQKTGAEAKI GSSKETAPTA  360
SPSKSKKGNH KDKLKEESKS GKSKETATNA TQGDGTLVGT NMGKADKGKL DGDTENVVPT  420
EATTIATHGD GTLVVTKKRK ADKGKSDGDT QNVIPTEATT IATHADDTLV VSKKGKADRG  480
RLDGDTQNVM SKEATTNSKG RENHEEVLHK EANETNIRRE FIELQTLYPN LASFVNGLEV  540
PHQSIFKRSF ELISDDEACT LETKIKNQRI DEVKMQLRLA NTRKAVVEAF FG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB0040G10040.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006664826.1	0.0	PREDICTED: hepatoma-derived growth factor-related protein 2-like
TrEMBL	J3KU43	0.0	J3KU43_ORYBR; Uncharacterized protein
STRING	OB0040G10040.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7289	27	37

Link Out ? help Back to Top
Entrez Gene	102708023