PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf33507g00004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 533aa    MW: 59890.4 Da    PI: 5.8447
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf33507g00004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.74.8e-14104217195
                               EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..................EEETTEEEE-T CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliy................rkksgryvltk 63 
                               f+kvlt sd++++  l++ ++ a ++       ++++ + +l+ +d++g +W + ++                 + +++r++ltk
  Niben101Scf33507g00004.1 104 FCKVLTASDTNSNWGLTVRREDAIKCfppldiTKQEPIQ-ELIAKDLNGPEWLFCHSKvhgvegklehlvyfyhTSQPRRHLLTK 187
                               99****************************885455554.999******7777777666677777777777777999999***** PP

                               THHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                        B3  64 GWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                               GW++Fv +++L +gD+v+F +    ++el+++
  Niben101Scf33507g00004.1 188 GWSKFVASKRLVAGDSVIFLRG--GNGELCIG 217
                               ********************43..56666776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-26100217IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-19100215IPR015300DNA-binding pseudobarrel domain
CDDcd100178.22E-15103216No hitNo description
SMARTSM010191.5E-6104222IPR003340B3 DNA binding domain
PfamPF023625.1E-11104217IPR003340B3 DNA binding domain
PROSITE profilePS508639.361104222IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MDGGIGSSHH QQQNHVLVEG GYLYRELWKA CTGPMMDLPI VGERVYYFPM THMELLKESA  60
DEIVPSFDLP TDIRCRVINI QLRVEPDTDE VYAHITLLPE ENSFCKVLTA SDTNSNWGLT  120
VRREDAIKCF PPLDITKQEP IQELIAKDLN GPEWLFCHSK VHGVEGKLEH LVYFYHTSQP  180
RRHLLTKGWS KFVASKRLVA GDSVIFLRGG NGELCIGTSS SLKTQHWFIT SFKSNRSRSD  240
CSGLPCFCHI KSLFCLLSAT RETINQDLAQ LASNGLSTNQ ASVDVLDCDV FSDIFLASHT  300
LFLENTPESN GNCVGVASTV QNFEGCREPQ RESFTTYPQQ PIPEPSATTL TLQPTDTLQA  360
MCTYSIPRQL PTEGPGFGSE QISWAGYQVA QQYVPILSRV IMRYPSTISG FKAITGALQS  420
VHLEMLAKLV DLLEKSRIGS MDNRNQFQVI KQYLADLKFI DISWYLAQID EVLKMEKLIQ  480
HQHTLARRID ETQFTLGQLN QELGLVRKEL EELTPKVGLS PPSKDCSILE GVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A5e-6252251229Auxin response factor 1
4ldy_B5e-6252251229Auxin response factor 1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783661.10.0PREDICTED: auxin response factor 1-like
RefseqXP_016464700.10.0PREDICTED: auxin response factor 1-like isoform X1
TrEMBLA0A1S3ZJL50.0A0A1S3ZJL5_TOBAC; auxin response factor 1-like isoform X1
TrEMBLA0A1U7X1W80.0A0A1U7X1W8_NICSY; auxin response factor 1-like
STRINGXP_009783661.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14681810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.42e-61auxin response factor 1