PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf32704g00002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 292aa MW: 32745.6 Da PI: 10.0244

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf32704g00002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.7	1.2e-38	75	134	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +e+ lkcprC+s+ntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+n+k+ Niben101Scf32704g00002.1 75 PETVLKCPRCESMNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNNKR 134 67889***************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-30	63	128	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.5E-32	77	133	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.301	79	133	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	81	117	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MAFSSIPIYL DPPNWQHEQG NHQQQLGVAN ENPSQLSPAM PPPPAVGGGG GGGTFGSIRP 60 GLIAERARLA KVIQPETVLK CPRCESMNTK FCYFNNYSLS QPRHFCKTCR RYWTRGGALR 120 NVPVGGGCRR NNKRGTKRSR SKSPTRSEKR NCPIISPNAT TSNNSIHHLP HPTHLSFFTT 180 PNLHNFSDFT PIENGINFGG SQPQDGTRDQ MDVQARFIDQ FRFQQMQQFP FFSTLEQQPS 240 NNLYQFEAAA EYHVGEVANV KVEQNKGTNS QGLNLPRNNL GVTNNQFWTN FH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009772448.1	1e-172	PREDICTED: dof zinc finger protein DOF3.6-like
Refseq	XP_016491280.1	1e-172	PREDICTED: dof zinc finger protein DOF3.6-like
TrEMBL	A0A1S4BQX0	1e-171	A0A1S4BQX0_TOBAC; dof zinc finger protein DOF3.6-like
TrEMBL	A0A1U7W1E6	1e-171	A0A1U7W1E6_NICSY; dof zinc finger protein DOF3.6-like
STRING	XP_009772448.1	1e-172	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.1	7e-41	OBF-binding protein 3