PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf28298g00006.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 212aa MW: 24738.3 Da PI: 8.8864

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf28298g00006.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	50.8	2.9e-16	117	206	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k +++s+v+ +l lp +f+++h k ++ +tl de+ ++e k+ k++ l++GW++F+ +++L +gD +vF+l+ Niben101Scf28298g00006.1 117 FVKPMLQSHVTGGFWLGLPVHFCNTHLPK--RDEFVTLIDENEDEFETKYLALKRG----LSGGWRGFAIDHELVDGDALVFQLI 195 89*******************999423..4457***********666665....9*********************9 PP SSSEE..EEEEE- CS B3 86 grsefelvvkvfr 98 + ++f +v ++r Niben101Scf28298g00006.1 196 EPTKF--KVYIIR 206 87777..888877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.6E-19	109	207	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.71E-23	111	208	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.07E-24	116	206	No hit	No description
SMART	SM01019	3.5E-21	117	208	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.575	117	208	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.1E-14	117	206	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MVESKKKMLA YEESRLKRLE ENKKRMEELN LGKLVQAVRT ATSPKPYPMK KVKPRVKQEI 60 DRSAVRRSNR VADKPPPNYK DRRDLLNRVY ADDEDRQYAI ERAEQLQSEL DADFASFVKP 120 MLQSHVTGGF WLGLPVHFCN THLPKRDEFV TLIDENEDEF ETKYLALKRG LSGGWRGFAI 180 DHELVDGDAL VFQLIEPTKF KVYIIRVNQA EE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009772546.1	1e-147	PREDICTED: B3 domain-containing protein At3g19184-like
Refseq	XP_016513011.1	1e-147	PREDICTED: B3 domain-containing protein At3g19184-like
Swissprot	Q1G3M3	1e-83	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	A0A1S4DHZ2	1e-146	A0A1S4DHZ2_TOBAC; B3 domain-containing protein At3g19184-like
TrEMBL	A0A1U7W5R2	1e-146	A0A1U7W5R2_NICSY; B3 domain-containing protein At3g19184-like
STRING	XP_009772546.1	1e-147	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1628	23	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	6e-86	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]