PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf27034g00003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 423aa MW: 46930.1 Da PI: 7.1069

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf27034g00003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.5	5.2e-32	228	283	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Niben101Scf27034g00003.1 228 KARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 283 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.6E-28	225	286	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.714	225	285	IPR017930	Myb domain
SuperFamily	SSF46689	5.73E-17	226	286	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-26	228	283	IPR006447	Myb domain, plants
Pfam	PF00249	7.2E-7	230	281	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence Send to blast
MMSSPSELSL ECKPHQSYSM LLKSFGEKFD QTQNLEAFVA RLEEERVKID AFKRELPLCM 60 QLLTNAMEAS RQQLQSYKEN QGRKPVFEEF IPLKNNNASG EENEKNIANT TDHNKANWMT 120 SAQLWSPGSE EIKEKSTQTS SKEITDISIS KLAFDNNFPC PTLALASTKQ SIEIVEDKKN 180 LERVNNYSGK DNSILLEQGK EGSNINQQPD SQSTGAVTNG TSTQQHRKAR RCWSPDLHRR 240 FVNALQMLGG SQVATPKQIR ELMKVDGLTN DEVKSHLQKY RLHTRRPSPS PQVATSAPQL 300 VVLGGIWVPP EYAAAAAHGG APPAATLYGA HPTSHAPSPH YIAAPHGTMA QEFYTTAPQP 360 LQSLHHLQHH YQHQQLYHHG SQMYNKPPSN SHTHSSPEPE SPGTGHGGDR SESIEDGKSE 420 SSS

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence Send to blast

MMSSPSELSL ECKPHQSYSM LLKSFGEKFD QTQNLEAFVA RLEEERVKID AFKRELPLCM  60
QLLTNAMEAS RQQLQSYKEN QGRKPVFEEF IPLKNNNASG EENEKNIANT TDHNKANWMT  120
SAQLWSPGSE EIKEKSTQTS SKEITDISIS KLAFDNNFPC PTLALASTKQ SIEIVEDKKN  180
LERVNNYSGK DNSILLEQGK EGSNINQQPD SQSTGAVTNG TSTQQHRKAR RCWSPDLHRR  240
FVNALQMLGG SQVATPKQIR ELMKVDGLTN DEVKSHLQKY RLHTRRPSPS PQVATSAPQL  300
VVLGGIWVPP EYAAAAAHGG APPAATLYGA HPTSHAPSPH YIAAPHGTMA QEFYTTAPQP  360
LQSLHHLQHH YQHQQLYHHG SQMYNKPPSN SHTHSSPEPE SPGTGHGGDR SESIEDGKSE  420
SSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-13	228	281	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-13	228	281	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-13	228	281	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-13	228	281	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-13	228	281	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-13	228	281	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-13	228	281	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-13	228	281	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-13	228	281	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-13	228	281	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-13	228	281	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-13	228	281	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269\|PubMed:25132385}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269\|PubMed:25132385}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009630682.1	0.0	PREDICTED: myb family transcription factor EFM
Swissprot	Q9ZQ85	1e-103	EFM_ARATH; Myb family transcription factor EFM
TrEMBL	A0A1J6I9A9	0.0	A0A1J6I9A9_NICAT; Myb family transcription factor efm
STRING	XP_009630682.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8794	22	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	1e-102	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]