PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf24848g00016.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 293aa    MW: 31344.2 Da    PI: 8.3252
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf24848g00016.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1452.3e-14212264456
                               XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                    bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                                +++rr++kNRe+A rsR+RK+a++ eLe  v +Le+eN +L ke  e +ke 
  Niben101Scf24848g00016.1 212 QQKQRRMIKNRESAARSRERKQAYTVELESLVTQLEEENARLLKEEAEKNKER 264
                               689************************************99876544433333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.1E-14208271No hitNo description
SMARTSM003381.6E-11209273IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.001211263IPR004827Basic-leucine zipper domain
PfamPF001709.0E-13211265IPR004827Basic-leucine zipper domain
CDDcd147075.49E-21213259No hitNo description
SuperFamilySSF579592.0E-10213263No hitNo description
PROSITE patternPS000360216231IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MASKVMPSAS TTPNSDRSCS RSCLPQNPTP SSSSSSLLHS DPSRKFGSMN MDELLNNIYS  60
DSPDPFCSAS ETTAPTPAAA GGDGRDVGPS KTVDEVWREI VSGGGVGGGG GSGREPEMTL  120
EDFLTKAGAV TEEDVRVPVI APPPATAAPA AGGFVVDNMG NCQFPMAMQN GPHMGFGNVV  180
VAIAGSGSGS GGSGRGKRRS TVEELPLDKA TQQKQRRMIK NRESAARSRE RKQAYTVELE  240
SLVTQLEEEN ARLLKEEAEK NKERLKQIME NLIPVVEKRR PPRVLRRVRS MSW
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009615514.11e-164PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7
SwissprotP427774e-44GBF4_ARATH; G-box-binding factor 4
TrEMBLA0A1S4CBV81e-154A0A1S4CBV8_TOBAC; ABSCISIC ACID-INSENSITIVE 5-like protein 7
STRINGXP_009615514.11e-163(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27712452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03970.11e-31G-box binding factor 4