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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf24249g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 259aa MW: 29018.1 Da PI: 6.406 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.3 | 7.3e-05 | 57 | 105 | 1 | 53 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 +r+ + erE+ R+++N+ f L l + + + Ka+iL ++ +++k+ Niben101Scf24249g00001.1 57 KRVHKAEREKLKREHLNELFLDLANALELS----EQTNGKASILNETARFVKD 105 79999**********************998....68899999***99999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.22E-10 | 54 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.6E-7 | 54 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.49E-5 | 54 | 117 | No hit | No description |
PROSITE profile | PS50888 | 10.779 | 56 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MSAESPTSSA ENGGIAVETS PYGSVDLVHF YSMLCGLSKM MSHPSPSCKK IQKKVPKRVH 60 KAEREKLKRE HLNELFLDLA NALELSEQTN GKASILNETA RFVKDMISQI KHLKRENTAL 120 LSESQYLSME KKELQDDNSA LEAQIGKLEG EVKEKVAETN LDLNLSLPET QLPQLASHVT 180 DNFLRLPGPE HPFQQIQMMN PLYVVPLNST PQAYPELDAA MPTYSVKKPQ ARYPTPADVW 240 PSQILEKRPQ LGQEVQNSL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019267673.1 | 1e-154 | PREDICTED: transcription factor bHLH47-like | ||||
Refseq | XP_019267674.1 | 1e-154 | PREDICTED: transcription factor bHLH47-like | ||||
Refseq | XP_019267675.1 | 1e-154 | PREDICTED: transcription factor bHLH47-like | ||||
TrEMBL | A0A314KZM1 | 1e-152 | A0A314KZM1_NICAT; Transcription factor bhlh47 | ||||
STRING | XP_009592394.1 | 1e-150 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4307 | 19 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47640.3 | 9e-43 | bHLH family protein |