PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf24149g00005.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 191aa MW: 20526.8 Da PI: 7.5997

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf24149g00005.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.1	6.6e-05	34	56	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F ++ L H++ H Niben101Scf24149g00005.1 34 YECQYCSREFANSQALGGHQNAH 56 99******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.21E-6	31	61	No hit	No description
Gene3D	G3DSA:3.30.160.60	9.0E-5	32	60	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	12.175	34	61	IPR007087	Zinc finger, C2H2
Pfam	PF13912	8.3E-6	34	58	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	36	56	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MTEEDQEQEV DSTTKTSSVS PESGSLPASD GRKYECQYCS REFANSQALG GHQNAHKKER 60 QQLKRAQMQA SRNAYMRNPI VSAFSPPSHL LSPPGTMVVP ASSPSWVYVP RAAPPFHGCV 120 FPTSNSARGV GNFQYTGGVA EPSLASVGPQ HVKAHSGRVD VNNGPSLSKL SRVDIGPNFD 180 DPFGLDLQLS L

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for the initiation of inflorescence trichomes in response to gibberellin and cytokinin. Acts upstream of GIS, GIS2, ZFP8, and the trichome initiation factors GL1 and GL3. Binds the promoter region of GIS and GIS2, which may be direct targets of GIS3. {ECO:0000269\|PubMed:25640859}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009783843.1	1e-131	PREDICTED: zinc finger protein 6-like
Refseq	XP_016445044.1	1e-131	PREDICTED: zinc finger protein 6-like
Swissprot	Q9C9H1	2e-48	GIS3_ARATH; Zinc finger protein GIS3
TrEMBL	A0A1S3XYX5	1e-130	A0A1S3XYX5_TOBAC; zinc finger protein 6-like
TrEMBL	A0A1U7WZ08	1e-130	A0A1U7WZ08_NICSY; zinc finger protein 6-like
STRING	XP_009783843.1	1e-131	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2994	14	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10970.1	6e-13	C2H2 family protein

Publications ? help Back to Top
Sun L, et al. GLABROUS INFLORESCENCE STEMS3 (GIS3) regulates trichome initiation and development in Arabidopsis. New Phytol., 2015. 206(1): p. 220-30 [PMID:25640859]