PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf24096g00018.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 299aa    MW: 33643.1 Da    PI: 4.7141
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf24096g00018.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_123.71e-07138179445
                               XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                    bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                               +k+ +r  +NR AA rsR+RKk ++  Le k+  +e+e k+L
  Niben101Scf24096g00018.1 138 DKKRKRQLRNRDAAVRSRERKKLYVRDLELKSRYFESECKRL 179
                               799**********************************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.5E-11134198No hitNo description
SMARTSM003382.8E-4135199IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.358137179IPR004827Basic-leucine zipper domain
PfamPF001703.3E-7138179IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.5E-9139196No hitNo description
CDDcd147044.35E-15140191No hitNo description
PROSITE patternPS000360142157IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0030968Biological Processendoplasmic reticulum unfolded protein response
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MVDDIDDIVG HINWDDVDDL FHNILEDPAD NLFSAHDPSA PSIQEIEQLL MNDDEIVGHV  60
AVGEPDFQLA DDFLSDVLAD SPVQSDLSHS DKVIGFPDSK VSSCSEVDDD DKDKEKVSQS  120
RIDSKDGSDE LNCDDPVDKK RKRQLRNRDA AVRSRERKKL YVRDLELKSR YFESECKRLG  180
LVLQCCLAEN QALRFSLQNG NANGACMTKQ ESAVLLLESL LLGSLLWFLG IICLLILPSQ  240
PWLIPEENQR SRNHGLLVPI KGGNKAGRIF EFLSFMMGKR CKASRSRMKF NPHSLGIVM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139158KRKRQLRNRDAAVRSRERKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00019PBMTransfer from AT1G42990Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019252016.10.0PREDICTED: bZIP transcription factor 60
TrEMBLA0A411DYI20.0A0A411DYI2_NICBE; BZIP60 transcription factor 60
STRINGXP_009608063.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA71012128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G42990.14e-21basic region/leucine zipper motif 60