PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf21897g00004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 449aa    MW: 51321.6 Da    PI: 4.4108
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf21897g00004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS95.77.2e-301303032187
                      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                                +lL +  ea+++g++el + ++  ++   +p g++++R+a+     L  ++ +         +    ++++s++   a+k+f++
  Niben101Scf21897g00004.1 130 HHLLAAYGEAIENGHKELSEVIIRSIKGKINPLGESLERIASN----LFLKIED---------QEDYLKQESSKNLEVAFKAFYQ 201
                               799999**********************************975....7888988.........2222222235666678999*** PP

                      GRAS  87 vsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLak 167
                               ++Pi kf+h++aN+aI+e++  + e++Hi+Dfd+++G+QWp++++a+ +R++    l+ T +++ +++   ++ + ee+++rL +
  Niben101Scf21897g00004.1 202 IFPIGKFAHFAANSAIMESIPVDvETIHIVDFDMGEGIQWPPIIEAICQRRKA---LKFTSIKKTREEstsDQWRFEEIKRRLLD 283
                               ********************9999**************************776...999999987776777999*********** PP

                      GRAS 168 fAeelgvpfefnvlvakrle 187
                               +Ae +g++++++ +++++l+
  Niben101Scf21897g00004.1 284 YAEPFGLRLQIEEMTVEELA 303
                               ************98776654 PP
2GRAS39.21.1e-12312443238369
                      GRAS 238 vvvvveqe...adhnsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrer 318
                               +v++ + e    +hn+ +F   f + l yy ++f+sle  +p+   e+r  +E  +l++++++    +  e  e   t  +W   
  Niben101Scf21897g00004.1 312 LVTFGDGEamdNSHNTITFSSFFNKNLIYYQSIFESLELYFPAYLaEARLAMESLFLAPQVCSFSWFQSWE--ETIHTCDSWG-- 392
                               67777777322456777************************99877********************99999..889999***5.. PP

                      GRAS 319 leeaGFkpvplsekaakqaklllrkvk.sdgyrveee.sgslvlgWkdrpLvs 369
                                 e G++  ++s+++  qak l+++ +     r+ee+ ++++vl Wk+ pL  
  Niben101Scf21897g00004.1 393 --EIGLQGRRISKENLLQAKELVNEREtPLKVRIEEQrQHEMVLEWKGTPLCQ 443
                               ..68*********************99655588885549999********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098520.679103449IPR005202Transcription factor GRAS
PfamPF035142.5E-27130303IPR005202Transcription factor GRAS
PfamPF035143.7E-10312443IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MTQSELLHNS WSSTFLQTEF CAIQIESQKY GLSDSSLNSS GIAFSDITSL FPDDVFTDLS  60
TDDLEFDDIF RWLNDSENEG NENMNNSFSY DMQKDGNLWS PAISGVSINS ASSLVIPGNS  120
KEMNTQISLH HLLAAYGEAI ENGHKELSEV IIRSIKGKIN PLGESLERIA SNLFLKIEDQ  180
EDYLKQESSK NLEVAFKAFY QIFPIGKFAH FAANSAIMES IPVDVETIHI VDFDMGEGIQ  240
WPPIIEAICQ RRKALKFTSI KKTREESTSD QWRFEEIKRR LLDYAEPFGL RLQIEEMTVE  300
ELAANSSTHR GLVTFGDGEA MDNSHNTITF SSFFNKNLIY YQSIFESLEL YFPAYLAEAR  360
LAMESLFLAP QVCSFSWFQS WEETIHTCDS WGEIGLQGRR ISKENLLQAK ELVNERETPL  420
KVRIEEQRQH EMVLEWKGTP LCQKCTEPY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019226130.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLA0A314KSF50.0A0A314KSF5_NICAT; Nodulation-signaling pathway 2 protein
STRINGPGSC0003DMT4000685070.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53611938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.13e-17RGA-like 2