PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf21770g00005.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HB-other

Protein Properties

Length: 916aa MW: 101237 Da PI: 5.8069

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf21770g00005.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	15.1	4.1e-05	688	748	1	54
TT--SS--HHHHHHHHHHHHHSSS-..-HHHHHHHHHHC.....TS-HHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknryp..saeereeLAkkl.....gLterqVkvWFqNrRak 54 +rkRt ++++q+ +e++ + ++ + ++++ e Ak+l ++t++q k+W Nr+a+ Niben101Scf21770g00005.1 688 KRKRTIMNEKQISLMEKALRDEPDMqrNKASLEFWAKELsvhgsEVTKSQLKNWLNNRKAR 748 79****************977771145678999***9***************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.3E-5	674	749	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.078	685	752	IPR001356	Homeobox domain
SMART	SM00389	2.5E-4	687	756	IPR001356	Homeobox domain
CDD	cd00086	3.52E-5	688	751	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0060195	Biological Process	negative regulation of antisense RNA transcription
GO:0005730	Cellular Component	nucleolus
GO:0003697	Molecular Function	single-stranded DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 916 aa Download sequence Send to blast
MKEEGASCST DPVARPIHPA LDLISAVKGL HGLGSQELSR LIREAENNIL QHIPDNGLNI 60 QIDVEKLARY LALHLIAVIL ASEANAGLLK YLLSGFQLLH SLSDLASRNP KIEQILLDDV 120 KVSEQLLDLV FYSLVILCTY SKFSIDMGLL HSTLVASSLY LLTVCISSQW HELAQVLLAY 180 YKVDVLIDTA FAAVTADIKI LRRNLSADHA HSQQEYGLKA EETLNHLCQQ CEASLQFLQS 240 LCQQKSFRER LVKNKELSSK GGVLLLAQAV MHLDVSPLVT LSSSIVAAVS RLKSKVLSIL 300 LNLCEAESLS YLDEVASTPA SLDLAKSIAL EVLNLLKKMF RTGFQQSIAP SDKIYPKGLL 360 QLNAMQLADI FSDDSNFRSF ITTHFTEVLT EIFSVAHGEF VSSWCSSDLP IREEDATLEY 420 DPFAAAGWVL DLFPFSDQSS ARSIEPTFVP SHVPRLSYPH QRTSLLVKVL ANLHCFVPDI 480 CKEEKDLFLN KFLHCLRTKV SETPEGFKCI SDSQKAATVG RNLGSLLSHA ESLIPAFLNE 540 EDVQLLRVFI TQLESLITPR ACGENRAQEA QNLGACLPPQ LREVAMDLNN RLNQLNSRIN 600 GEGQSGEAGM KAQMTEQDKF IATDVEMKDI EKDTQNVETS GSDSSSSRSR HPTDQAGKVE 660 KINCNGPGDG GEDEMAEASQ HEEKQQRKRK RTIMNEKQIS LMEKALRDEP DMQRNKASLE 720 FWAKELSVHG SEVTKSQLKN WLNNRKARLA RAAKDGRTLS EGDNLDKHGG SLVLPPCDSP 780 GSPVEDVGNL SAARENVHRV TGLAPSTCFT ENSAAVSVAS TETAKCMAGQ YVVLVNDKAE 840 EIGRGKVCQV SGKWYQRDLE ELGTCVVDII DLKVDRSAKL PYPSELTGTS FDQAERKFGF 900 MRVLWQSNKL FVLPAR

Sequence ? help Back to Top

Protein Sequence Length: 916 aa Download sequence Send to blast

MKEEGASCST DPVARPIHPA LDLISAVKGL HGLGSQELSR LIREAENNIL QHIPDNGLNI  60
QIDVEKLARY LALHLIAVIL ASEANAGLLK YLLSGFQLLH SLSDLASRNP KIEQILLDDV  120
KVSEQLLDLV FYSLVILCTY SKFSIDMGLL HSTLVASSLY LLTVCISSQW HELAQVLLAY  180
YKVDVLIDTA FAAVTADIKI LRRNLSADHA HSQQEYGLKA EETLNHLCQQ CEASLQFLQS  240
LCQQKSFRER LVKNKELSSK GGVLLLAQAV MHLDVSPLVT LSSSIVAAVS RLKSKVLSIL  300
LNLCEAESLS YLDEVASTPA SLDLAKSIAL EVLNLLKKMF RTGFQQSIAP SDKIYPKGLL  360
QLNAMQLADI FSDDSNFRSF ITTHFTEVLT EIFSVAHGEF VSSWCSSDLP IREEDATLEY  420
DPFAAAGWVL DLFPFSDQSS ARSIEPTFVP SHVPRLSYPH QRTSLLVKVL ANLHCFVPDI  480
CKEEKDLFLN KFLHCLRTKV SETPEGFKCI SDSQKAATVG RNLGSLLSHA ESLIPAFLNE  540
EDVQLLRVFI TQLESLITPR ACGENRAQEA QNLGACLPPQ LREVAMDLNN RLNQLNSRIN  600
GEGQSGEAGM KAQMTEQDKF IATDVEMKDI EKDTQNVETS GSDSSSSRSR HPTDQAGKVE  660
KINCNGPGDG GEDEMAEASQ HEEKQQRKRK RTIMNEKQIS LMEKALRDEP DMQRNKASLE  720
FWAKELSVHG SEVTKSQLKN WLNNRKARLA RAAKDGRTLS EGDNLDKHGG SLVLPPCDSP  780
GSPVEDVGNL SAARENVHRV TGLAPSTCFT ENSAAVSVAS TETAKCMAGQ YVVLVNDKAE  840
EIGRGKVCQV SGKWYQRDLE ELGTCVVDII DLKVDRSAKL PYPSELTGTS FDQAERKFGF  900
MRVLWQSNKL FVLPAR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016462731.1	0.0	PREDICTED: nodulin homeobox-like
Refseq	XP_016462732.1	0.0	PREDICTED: nodulin homeobox-like
TrEMBL	A0A1S3ZEL8	0.0	A0A1S3ZEL8_TOBAC; nodulin homeobox-like
STRING	XP_009778419.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7844	5	7