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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf20949g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 110aa MW: 12373.1 Da PI: 10.555 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 59.1 | 5.4e-19 | 13 | 53 | 1 | 41 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 k+i+n+ r+vtfskRr g++KKA+EL++L +ae+ +++ s Niben101Scf20949g00001.1 13 KPIDNQNSRHVTFSKRRLGLFKKASELCILSGAEIVILVQS 53 78************************************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.5E-22 | 5 | 65 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 20.114 | 5 | 53 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 6.89E-22 | 6 | 53 | No hit | No description |
SuperFamily | SSF55455 | 1.31E-19 | 6 | 84 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-11 | 7 | 27 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.4E-17 | 15 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-11 | 27 | 42 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 110 aa Download sequence Send to blast |
MKNTQGRRKI AIKPIDNQNS RHVTFSKRRL GLFKKASELC ILSGAEIVIL VQSLKRQRLL 60 AFGHPSANYL TGKSSSSSST VDQLNVQQNN QYYSQICKEL EAEKGKNGDY |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019234246.1 | 2e-56 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A1J6L6Y0 | 3e-55 | A0A1J6L6Y0_NICAT; Agamous-like mads-box protein agl62 | ||||
STRING | XP_009761268.1 | 2e-55 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2134 | 22 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36590.1 | 2e-20 | M-type_MADS family protein |