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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf20887g00017.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bZIP | ||||||||
Protein Properties | Length: 200aa MW: 22332 Da PI: 9.9197 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 29.2 | 2e-09 | 3 | 56 | 8 | 61 |
HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 8 rrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 rr NR +A rs +RK +i eLe+kv++L++e ++L +l + l++ Niben101Scf20887g00017.1 3 RRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTGLTN 56 78889**********************************999877766665555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.9E-10 | 1 | 60 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.013 | 1 | 61 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 1.26E-20 | 2 | 50 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 5.5E-10 | 3 | 54 | No hit | No description |
SuperFamily | SSF57959 | 1.62E-10 | 3 | 51 | No hit | No description |
Pfam | PF00170 | 9.6E-8 | 3 | 48 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MLRRILANRQ SAARSKERKA RYISELERKV QTLQTEATTL SAQLTLFQRD TTGLTNENTE 60 LKLRLQAMEQ QAQLRDALNE ALKQEVERLK IATGQISASS DSYNSGMQQI SYNRPTFFPH 120 QPQPGPSEPP NTQMPQFHTL QGSMSNPRHP LLAGHAQALT DTMQQDPLGR FQGLDINSRG 180 SHLVKTEAPS ISASESSSTF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016432422.1 | 1e-127 | PREDICTED: transcription factor RF2b-like | ||||
Swissprot | Q6S4P4 | 6e-70 | RF2B_ORYSJ; Transcription factor RF2b | ||||
TrEMBL | A0A1S3WXS4 | 1e-125 | A0A1S3WXS4_TOBAC; transcription factor RF2b-like | ||||
STRING | XP_009769625.1 | 1e-125 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3425 | 23 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06850.1 | 2e-65 | basic leucine-zipper 52 |
Publications ? help Back to Top | |||
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