PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf20828g00002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 245aa    MW: 28500.5 Da    PI: 9.0134
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf20828g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM142.62.3e-44141381128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                               lppGfrF+Pt+ee+v +yL +k+ + +l++ ++i+e++i+ ++PwdLp  +   e++ yfFs+++ ky++g+r+nrat  gyWk 
  Niben101Scf20828g00002.1  14 LPPGFRFQPTEEEIVFQYLIRKTFSCPLPA-SIIPEINICMHDPWDLPGDI---EQDRYFFSNKEAKYRKGNRSNRATLGGYWKP 94 
                               79****************************.89***************554...5689*************************** PP

                       NAM  86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                               tg dk++ ++ ++   g+kktLvfykg+++++ +tdW+mheyrl
  Niben101Scf20828g00002.1  95 TGLDKQIRCSkRKPILGMKKTLVFYKGKSSHAFRTDWIMHEYRL 138
                               *******998345559**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.11E-5111173IPR003441NAC domain
PROSITE profilePS5100549.21414173IPR003441NAC domain
PfamPF023654.7E-2315138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MDKFNFVKDG AIKLPPGFRF QPTEEEIVFQ YLIRKTFSCP LPASIIPEIN ICMHDPWDLP  60
GDIEQDRYFF SNKEAKYRKG NRSNRATLGG YWKPTGLDKQ IRCSKRKPIL GMKKTLVFYK  120
GKSSHAFRTD WIMHEYRLVL PKNQPFNFHH FKKSSQSCMV QIGNWVLCHI FMKRRNGKCD  180
QDILEADHQH VQIPKQTLYY DFIREDLSDR AISSCSSSLS NDDSSEVSSN PSGLIEHEEA  240
SNRAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-39917410169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019262413.11e-165PREDICTED: NAC domain-containing protein 83-like
SwissprotQ9FY931e-69NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A314LAJ81e-164A0A314LAJ8_NICAT; Nac domain-containing protein 83
STRINGXP_009597132.11e-160(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13872377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-71NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]