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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Niben101Scf20652g01023.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family |
SRS |
| Protein Properties |
Length: 296aa MW: 32625.1 Da PI: 8.6414 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Niben101Scf20652g01023.1 | genome | BTI | - |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 199.5 | 1e-61 | 93 | 230 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsals 87
+g+++CqdCGnqa+kdC h+RCRtCC+ rgf+C+thvkstWvpaa+rrerqqq +++kr+r+ + s+l+
Niben101Scf20652g01023.1 93 QGNVNCQDCGNQARKDCPHSRCRTCCRGRGFQCQTHVKSTWVPAARRRERQQQFLE-----------NHPKRPRDI--ISGSSLA 164
7899**********************************************988654...........578999997..7789999 PP
DUF702 88 stklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
t+l++++s e+ + +P+evss+avfrcv+vs+v+d+e+++aYqtav+igGh+fkG+LydqG+++
Niben101Scf20652g01023.1 165 YTRLPTTSSGLEMGSH-FPPEVSSPAVFRCVKVSGVEDAEQHYAYQTAVNIGGHIFKGMLYDQGPDQ 230
9****99999887765.************************************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 296 aa
Download sequence Send
to blast |
MSWFFSLGGG KEQEPEELAT NNLSLFKNEE IYNKGFKLWQ QLQQQRQQQN QEQDRVDFSI 60
CGGPASSSTP SNNNSLGFRV MNMRGGGSRS GDQGNVNCQD CGNQARKDCP HSRCRTCCRG 120
RGFQCQTHVK STWVPAARRR ERQQQFLENH PKRPRDIISG SSLAYTRLPT TSSGLEMGSH 180
FPPEVSSPAV FRCVKVSGVE DAEQHYAYQT AVNIGGHIFK GMLYDQGPDQ NRYRGGGGAG 240
ESSSQPLNFI AGATAAASSQ QQQGVSIAMF DPASIYPNHQ LSGFMAGTQF FQPPRP
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
