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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf19266g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 289aa MW: 30081.9 Da PI: 5.3078 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.7 | 8.1e-20 | 30 | 79 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrd s+ + r++lg+f+ aeeAa+a++aa+++++g Niben101Scf19266g00006.1 30 HYRGVRKRP-WGRYAAEIRDSSK---NSRVWLGTFDKAEEAARAYDAAAREFHG 79 69*******.**********543...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.1E-37 | 30 | 93 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-30 | 30 | 87 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-22 | 30 | 88 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.74E-17 | 30 | 87 | No hit | No description |
Pfam | PF00847 | 4.0E-13 | 30 | 79 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.8 | 30 | 87 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-10 | 31 | 42 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-10 | 53 | 69 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MAQNAIGDAA LTLAIPAAEN MKSGISKEIH YRGVRKRPWG RYAAEIRDSS KNSRVWLGTF 60 DKAEEAARAY DAAAREFHGT KAKTNFPPPT VIKDSSPGPL NLNLGGGSSV GSGGSFTYLK 120 QNNLNLGGGS SVGSAASFTY LKQNHQFPDF LAAGSSAPPS ARDYQYLEAL TGAEVSHGDP 180 SSQRGTVAFL GGGDSVSGCG IQTESESSSV PNYNFADALT GAEVSHGDPS SQRGTVAFLG 240 GGDSVSGCGI QTESESSSVP NYNFADVNQP TITTNCLNLD LNLPPPYNM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 9e-21 | 30 | 87 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 5e-20 | 31 | 87 | 15 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009591053.1 | 1e-129 | PREDICTED: ethylene-responsive transcription factor 8-like | ||||
Refseq | XP_016506469.1 | 1e-129 | PREDICTED: ethylene-responsive transcription factor 8-like | ||||
TrEMBL | R4WAR7 | 1e-128 | R4WAR7_TOBAC; Ethylene response factor #206 | ||||
STRING | XP_009591053.1 | 1e-129 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15195 | 5 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15210.1 | 7e-23 | ethylene responsive element binding factor 4 |