PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf18662g00010.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 573aa    MW: 63199.6 Da    PI: 6.7745
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf18662g00010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.64.1e-11411469563
                               CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                    bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                               kr++r   NR +A rs +RK  +i+eLe kv++L++e ++L  +l  l+  ++ l+s++
  Niben101Scf18662g00010.1 411 KRAKRILANRQSAARSKERKMRYIAELEHKVQTLQTEATTLSAQLTLLQRDSSGLTSQN 469
                               9*************************************************999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.3E-18407471IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.875409472IPR004827Basic-leucine zipper domain
PfamPF001707.0E-10411469IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.96E-11411461No hitNo description
Gene3DG3DSA:1.20.5.1705.7E-11411468No hitNo description
CDDcd147031.45E-23412461No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MGGESDEANT EMMRRLQSSF GTSSSSLQKP QYISTNQLDI PQLSTSQFHG QMRQFSPNFG  60
VENSTKRVGV SPSHLQMPPI SPYSHIPVSR PTSQQHGMQS FTTQGPSHSR SLSQPSFFSL  120
DSLPPLSPSP YMESLSTFIS DPVAADVSME DRDGNSHSSL PPSPFSRCNS SRVGESLPPR  180
KAHRRSNSDI PFGFSSIMQS SPPLVPSRSP AQLVKREAYW DKSNDKNSEG MGERKSEGED  240
VDDLFSAYMN LDNIESLNSS GIDEKQGNDN REDLDSRASG TKTNGCDSSD NEATSSVNDS  300
GSSMHTLGMS SSTEKREGIK RSAEGDIAPT VRHYRSVSMD SFMGKLNFGD ESPKLPPSPG  360
PHHGQLSPSN SLDANSDSFS LEFGNGEFNG AELKKIMANE KLAEIALADP KRAKRILANR  420
QSAARSKERK MRYIAELEHK VQTLQTEATT LSAQLTLLQR DSSGLTSQNN ELKFRLQAME  480
QQAHLRDALN EALTSEVQRL KIATAELNGD AAKFQQLSLN PQMFHLQRQQ ATQLSMHQLQ  540
HQQQQQQQQQ EKASSHHQQH AQTNSAPAKH ELK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009625788.10.0PREDICTED: probable transcription factor PosF21
RefseqXP_009625795.10.0PREDICTED: probable transcription factor PosF21
RefseqXP_009625801.10.0PREDICTED: probable transcription factor PosF21
TrEMBLA0A1S4CWD20.0A0A1S4CWD2_TOBAC; probable transcription factor PosF21
STRINGXP_009625788.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12652478
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.31e-147bZIP family protein