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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf18268g01001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 432aa MW: 48844.2 Da PI: 7.566 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 352.6 | 6.3e-108 | 40 | 426 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 l++lLl+cA++ ssg+l+ a+a+L+++ +la+ +gd+mqRlaa f+ ALa rl++ +++lykal ++ + ++ ++ ++ +f Niben101Scf18268g01001.1 40 LIHLLLTCANHTSSGNLHHADACLSQILQLAAITGDSMQRLAAWFASALAIRLVKRWPGLYKALDRRAVP-SRIVDLDRSRITFA 123 689*************************************************************999987.567777788889** PP GRAS 86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAe 170 +++P+l f++ + N+ + +a+++++ +Hi+Df+ + W ++l+ + + p+g+p+l+iT v++ +k +lee+++r++k A+ Niben101Scf18268g01001.1 124 KAFPYLGFAYAVINKVLIQAMSEDHIIHIVDFGSGDAKLWTPFLKNIVNLPNGTPNLKITSVNN----NKAMLEEMESRIKKEAK 204 ****************************************************************....9**************** PP GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll.................desvsleserdevLklvkslsPkv 238 +l+++f+f+ l +l +l+l++L+vk gE+la +vl+lh ll +++v+ ++ +e+L ++ slsPkv Niben101Scf18268g01001.1 205 ALDISFQFSSL-NVNLRELTLDMLKVKAGESLAFVSVLNLHVLLaeddrinsqfdlnknnnNNNVKECKRMNEFLTMLHSLSPKV 288 **********5.889*******************************************98877777777999************* PP GRAS 239 vvvveqeadhnsesFlerflealeyysalfdsleaklpres....eerikvErellgreivnvvacegaerrerhetlekWrerl 319 +++veqeadhn +++++rf+e l+yysalfds+++k+ + eer+ +E++ lg+ei+n+vaceg er+erhe+++kW rl Niben101Scf18268g01001.1 289 LILVEQEADHNLSKLVDRFVEGLHYYSALFDSIDTKFKGSNyslcEERVELEQM-LGKEIENMVACEGLEREERHERFGKWILRL 372 ************************************998889999*********.****************************** PP GRAS 320 eeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 ++ GF+pv+l ++++++ak+l++ ++ dgy++ +++gsl+++W+drp++svSaW Niben101Scf18268g01001.1 373 TRGGFRPVRLWYDIMEDAKRLVEAYGCDGYKIISQKGSLMICWHDRPIYSVSAW 426 ****************************************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 47.606 | 14 | 407 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.2E-105 | 40 | 426 | IPR005202 | Transcription factor GRAS |
Gene3D | G3DSA:3.40.50.150 | 8.2E-6 | 135 | 216 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
Sequence ? help Back to Top |
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Protein Sequence Length: 432 aa Download sequence Send to blast |
MNISSPAIKP DVTLSLTLSS STSTSSNTTT DSPEERGVKL IHLLLTCANH TSSGNLHHAD 60 ACLSQILQLA AITGDSMQRL AAWFASALAI RLVKRWPGLY KALDRRAVPS RIVDLDRSRI 120 TFAKAFPYLG FAYAVINKVL IQAMSEDHII HIVDFGSGDA KLWTPFLKNI VNLPNGTPNL 180 KITSVNNNKA MLEEMESRIK KEAKALDISF QFSSLNVNLR ELTLDMLKVK AGESLAFVSV 240 LNLHVLLAED DRINSQFDLN KNNNNNNVKE CKRMNEFLTM LHSLSPKVLI LVEQEADHNL 300 SKLVDRFVEG LHYYSALFDS IDTKFKGSNY SLCEERVELE QMLGKEIENM VACEGLEREE 360 RHERFGKWIL RLTRGGFRPV RLWYDIMEDA KRLVEAYGCD GYKIISQKGS LMICWHDRPI 420 YSVSAWNCAF IN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 3e-44 | 34 | 427 | 12 | 378 | Protein SCARECROW |
5b3h_D | 3e-44 | 34 | 427 | 12 | 378 | Protein SCARECROW |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009759684.1 | 0.0 | PREDICTED: scarecrow-like protein 3 | ||||
TrEMBL | A0A1U7VBL1 | 0.0 | A0A1U7VBL1_NICSY; scarecrow-like protein 3 | ||||
STRING | XP_009759684.1 | 0.0 | (Nicotiana sylvestris) | ||||
STRING | XP_009603019.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13570 | 12 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 1e-109 | scarecrow-like 3 |